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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
    </build-info>


<item>
            <title>[SIM2D-95] Interface to target spectra library</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/SIM2D-95</link>
                <project id="10000" key="SIM2D">DRP 2-D Simulator</project>
                    <description>&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=sdj&quot; class=&quot;user-hover&quot; rel=&quot;sdj&quot;&gt;Sean Johnson&lt;/a&gt; will provide a library of target spectra that we want the Simulator to use. Until that is ready, the Simulator has been hard-wired to produce flat F&amp;#95;nu spectra. Once the library has been delivered, we need to have the Simulator pull spectra from the library.&lt;/p&gt;</description>
                <environment></environment>
        <key id="13248">SIM2D-95</key>
            <summary>Interface to target spectra library</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="price">price</reporter>
                        <labels>
                    </labels>
                <created>Tue, 29 Jan 2019 16:06:27 +0000</created>
                <updated>Fri, 5 Apr 2019 12:01:17 +0000</updated>
                            <resolved>Fri, 5 Apr 2019 06:05:52 +0000</resolved>
                                                    <fixVersion>6.0</fixVersion>
                                        <due></due>
                            <votes>0</votes>
                                    <watches>3</watches>
                                                                <comments>
                            <comment id="15075" author="rhl" created="Thu, 7 Mar 2019 22:49:22 +0000"  >&lt;p&gt;By &quot;hard wired&quot; do you mean that the input &lt;tt&gt;pfsSimObject&lt;/tt&gt; files all represent flat F_nu objects?  If not, can&apos;t we complete the book-keeping without waiting for Sean?&lt;/p&gt;</comment>
                            <comment id="15076" author="price" created="Thu, 7 Mar 2019 22:53:17 +0000"  >&lt;p&gt;By &quot;hardwired&quot;, I mean that the input spectrum regardless of &lt;tt&gt;objId&lt;/tt&gt; is a flat F_nu object. There&apos;s no file backing those. I believe the bookkeeping has been taken care of already, and we&apos;re just waiting to make the switch once the spectra are delivered.&lt;/p&gt;</comment>
                            <comment id="15079" author="rhl" created="Thu, 7 Mar 2019 23:17:04 +0000"  >&lt;p&gt;How hard is it to make a file of the proper input format? &#160;Are the arcs and sky also hard-wired (I seem to remember some horrors with the sky).&lt;/p&gt;

&lt;p&gt;Is there a ticket for Sean to provide the &quot;real&quot; spectra?&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;</comment>
                            <comment id="15169" author="price" created="Sat, 23 Mar 2019 02:33:14 +0000"  >&lt;p&gt;Here&apos;s a simulated galaxy spectrum from &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=sdj&quot; class=&quot;user-hover&quot; rel=&quot;sdj&quot;&gt;Sean Johnson&lt;/a&gt; after it&apos;s been inserted into the 2D simulator and run all the way through the pipeline. You can see the Balmer break and [OII] at 757.5nm, so z=1.03.&lt;br/&gt;
&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/11825/11825_spectrum.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/span&gt;&lt;/p&gt;
&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
from lsst.daf.persistence &lt;span class=&quot;code-keyword&quot;&gt;import&lt;/span&gt; Butler
butler = Butler(&lt;span class=&quot;code-quote&quot;&gt;&quot;/home/pfs/pfs/sim2d-95/INTEGRATION/rerun/integration/pipeline&quot;&lt;/span&gt;)
spectrum = butler.get(&lt;span class=&quot;code-quote&quot;&gt;&quot;pfsCoadd&quot;&lt;/span&gt;, catId=1, tract=0, patch=&lt;span class=&quot;code-quote&quot;&gt;&quot;0,0&quot;&lt;/span&gt;, objId=0x12, numExp=4, expHash=0x1eab2e92)
fig, axes = spectrum.plot(plotSky=False, plotErrors=False, show=True)
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;</comment>
                            <comment id="15170" author="price" created="Sat, 23 Mar 2019 02:36:04 +0000"  >&lt;p&gt;Here&apos;s how I ran the simulator:&lt;/p&gt;
&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
pfs@0f30f57bf254:~/pfs/SIMS/raw $ makePfiDesign --fibers lam --pfiDesignId 1 --scienceCatId 1 --scienceObjId &lt;span class=&quot;code-quote&quot;&gt;&quot;18 55 71 76 93 94 105 112 115&quot;&lt;/span&gt;
pfs@0f30f57bf254:~/pfs/SIMS/raw $ makePfiDesign --fibers lam --pfiDesignId 2 --scienceCatId 1 --scienceObjId &lt;span class=&quot;code-quote&quot;&gt;&quot;18 55 71 76 93 94 105 112 115&quot;&lt;/span&gt;
pfs@0f30f57bf254:~/pfs/SIMS/raw $ makeSimRun 1 2
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;

&lt;p&gt;Of course, more extensive simulations will require a lot more work to build the necessary &lt;tt&gt;PfsDesign&lt;/tt&gt; files: this is just building two exposures, each with 7 science objects (plus 2 sky and 1 flux standard).&lt;/p&gt;</comment>
                            <comment id="15171" author="price" created="Sat, 23 Mar 2019 02:41:02 +0000"  >&lt;p&gt;I believe this is ready for review.&lt;/p&gt;

&lt;p&gt;Once it merges, I&apos;ll provide a build on tiger and instructions on how to run it.&lt;/p&gt;</comment>
                            <comment id="15219" author="price" created="Mon, 1 Apr 2019 01:21:09 +0000"  >&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=hassan&quot; class=&quot;user-hover&quot; rel=&quot;hassan&quot;&gt;hassan&lt;/a&gt;: I think you signed off on this on GitHub. Is it OK to merge?&lt;/p&gt;</comment>
                            <comment id="15222" author="hassan" created="Mon, 1 Apr 2019 15:10:49 +0000"  >&lt;p&gt;Yes, sorry. I&apos;ve changed the status to &apos;Review Complete&apos;.&lt;/p&gt;</comment>
                            <comment id="15259" author="hassan" created="Thu, 4 Apr 2019 15:42:59 +0000"  >&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=price&quot; class=&quot;user-hover&quot; rel=&quot;price&quot;&gt;price&lt;/a&gt;: feel free to merge so that this ticket can be closed.&lt;/p&gt;</comment>
                            <comment id="15286" author="price" created="Fri, 5 Apr 2019 06:05:52 +0000"  >&lt;p&gt;Merged to master.&lt;/p&gt;</comment>
                    </comments>
                <issuelinks>
                            <issuelinktype id="10000">
                    <name>Blocks</name>
                                            <outwardlinks description="blocks">
                                        <issuelink>
            <issuekey id="13420">SIM2D-115</issuekey>
        </issuelink>
                            </outwardlinks>
                                                        </issuelinktype>
                    </issuelinks>
                <attachments>
                            <attachment id="11825" name="spectrum.png" size="86636" author="price" created="Sat, 23 Mar 2019 02:31:29 +0000"/>
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