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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[REDMINE1D-42] [RM-6123] set FittedTplMeiksinIdx output value to -1 when non applicable</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/REDMINE1D-42</link>
                <project id="11002" key="REDMINE1D">1D Redmine </project>
                    <description>&lt;p&gt;&lt;em&gt;&lt;font color=&quot;#505f79&quot;&gt; Created on 2020-11-13 14:38:44 by Didier Vibert. % Done: 100&lt;/font&gt;&lt;/em&gt;&lt;/p&gt;


&lt;p&gt;FittedTplMeiksinIdx is an output given for each redshift solution and refers to the igm extinction curve selected for the model. The curves comes from Meiksin 2005, 7 curves times 11 redshift bins .The index goes from 0 to 6, selecting one of the 7 curves of the redshift bin corresponding to the redshift solution.&lt;/p&gt;

&lt;p&gt;when the IGM extinction is not applied or when the the redshift is too small, there is no extinction applied. In such a case the output is currently left to zero.&lt;/p&gt;

&lt;p&gt;A non-ambiguous value of &quot;-1&quot; should be set instead&lt;/p&gt;</description>
                <environment></environment>
        <key id="16746">REDMINE1D-42</key>
            <summary>[RM-6123] set FittedTplMeiksinIdx output value to -1 when non applicable</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="r2j.migrate">Redmine-Jira Migtation</assignee>
                                    <reporter username="r2j.migrate">Redmine-Jira Migtation</reporter>
                        <labels>
                    </labels>
                <created>Fri, 4 Jun 2021 01:20:33 +0000</created>
                <updated>Tue, 13 Jun 2023 06:12:14 +0000</updated>
                            <resolved>Tue, 13 Jun 2023 06:12:14 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>2</watches>
                                                                <comments>
                            <comment id="32976" author="yuki.moritani" created="Tue, 13 Jun 2023 06:11:57 +0000"  >&lt;p&gt;Comment by Mira Sarkis on 2021-06-30 16:25:56:&lt;/p&gt;
&lt;ul&gt;
	&lt;li&gt;done for templatefitting.&lt;/li&gt;
	&lt;li&gt;done for tplCombination as part of issue #6086&lt;/li&gt;
	&lt;li&gt;already done for templatefittingLOG (since we disable igm once we determine that igm cannot be applied. IGM disabling happens pior to iterating over Meiksin values)&lt;/li&gt;
	&lt;li&gt;Note that there is nothing to do for linemodel since it uses TF and/OR TFLOG to fit the continuum (including selecting the best IGM value)&lt;/li&gt;
&lt;/ul&gt;
</comment>
                            <comment id="32977" author="yuki.moritani" created="Tue, 13 Jun 2023 06:11:59 +0000"  >&lt;p&gt;Comment by Mira Sarkis on 2021-07-20 13:49:19:&lt;br/&gt;
Ajout d&apos;un controle sur les valeurs de redshift dans TFLOG et sur les valeurs de lambda pour d&#233;terminer si la raie lya apparait ou pas.&lt;br/&gt;
Sinon, on d&#233;sactive IGM et on sort -1 comme valeur par d&#233;faut pour l&apos;indice IGM.&lt;/p&gt;

&lt;p&gt;En cons&#233;quence de ce changement, pas mal d&apos;indices IGM passe &#224; -1 dans le it, nottament pour sp8 et qp8_qso_linemodel&lt;br/&gt;
Sinon, suite &#224; la d&#233;sactivation de l&apos;IGM, ie., absence de l&apos;appel &#224; @::ApplyMeiksinCoeff@, des l&#233;geres diff&#233;rences (de l&apos;ordre de 10-6 max) apparaissent sur la pdf et certaines valeurs (proba, continuumAmp, ) de sortie de se8_galaxy_templatefitting_fft). Ceci n&apos;implique aucun changement sur les valeurs finales des redshifts.&lt;/p&gt;</comment>
                            <comment id="32978" author="yuki.moritani" created="Tue, 13 Jun 2023 06:12:02 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2021-07-20 15:37:03:&lt;br/&gt;
Mira Sarkis wrote in #note-9:&lt;br/&gt;
&amp;gt;&lt;br/&gt;
&amp;gt; Sinon, suite &#224; la d&#233;sactivation de l&apos;IGM, ie., absence de l&apos;appel &#224; @::ApplyMeiksinCoeff@, des l&#233;geres diff&#233;rences (de l&apos;ordre de 10-6 max) apparaissent sur la pdf et certaines valeurs (proba, continuumAmp, ) de sortie de se8_galaxy_templatefitting_fft). Ceci n&apos;implique aucun changement sur les valeurs finales des redshifts.&lt;/p&gt;

&lt;p&gt;&#231;a me g&#232;ne un peu: normalement une multiplication par 1.0 ou son absence ne devrait pas changer le r&#233;sultat (bit-perfect) ??&lt;/p&gt;</comment>
                            <comment id="32979" author="yuki.moritani" created="Tue, 13 Jun 2023 06:12:04 +0000"  >&lt;p&gt;Comment by Mira Sarkis on 2021-07-20 15:48:01:&lt;br/&gt;
Didier Vibert wrote in #note-10:&lt;br/&gt;
&amp;gt; Mira Sarkis wrote in #note-9:&lt;br/&gt;
&amp;gt; &amp;gt;&lt;br/&gt;
&amp;gt; &amp;gt; Sinon, suite &#224; la d&#233;sactivation de l&apos;IGM, ie., absence de l&apos;appel &#224; @::ApplyMeiksinCoeff@, des l&#233;geres diff&#233;rences (de l&apos;ordre de 10-6 max) apparaissent sur la pdf et certaines valeurs (proba, continuumAmp, ) de sortie de se8_galaxy_templatefitting_fft). Ceci n&apos;implique aucun changement sur les valeurs finales des redshifts.&lt;br/&gt;
&amp;gt; &lt;br/&gt;
&amp;gt; &#231;a me g&#232;ne un peu: normalement une multiplication par 1.0 ou son absence ne devrait pas changer le r&#233;sultat (bit-perfect) ??&lt;/p&gt;

&lt;p&gt;oui sauf que pour TFLOG, on a aussi chang&#233; les valeurs de zrange et donc nPaddedSamples change aussi et comme on a vu dans l&apos;issue #5988 des l&#233;g&#232;res modifications sont introduites.&lt;/p&gt;</comment>
                            <comment id="32980" author="yuki.moritani" created="Tue, 13 Jun 2023 06:12:06 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2021-07-21 07:47:08:&lt;br/&gt;
Mira Sarkis wrote in #note-11:&lt;br/&gt;
&amp;gt; Didier Vibert wrote in #note-10:&lt;br/&gt;
&amp;gt; &amp;gt; Mira Sarkis wrote in #note-9:&lt;br/&gt;
&amp;gt; &amp;gt; &amp;gt;&lt;br/&gt;
&amp;gt; &amp;gt; &amp;gt; Sinon, suite &#224; la d&#233;sactivation de l&apos;IGM, ie., absence de l&apos;appel &#224; @::ApplyMeiksinCoeff@, des l&#233;geres diff&#233;rences (de l&apos;ordre de 10-6 max) apparaissent sur la pdf et certaines valeurs (proba, continuumAmp, ) de sortie de se8_galaxy_templatefitting_fft). Ceci n&apos;implique aucun changement sur les valeurs finales des redshifts.&lt;br/&gt;
&amp;gt; &amp;gt; &lt;br/&gt;
&amp;gt; &amp;gt; &#231;a me g&#232;ne un peu: normalement une multiplication par 1.0 ou son absence ne devrait pas changer le r&#233;sultat (bit-perfect) ??&lt;br/&gt;
&amp;gt; &lt;br/&gt;
&amp;gt; oui sauf que pour TFLOG, on a aussi chang&#233; les valeurs de zrange et donc nPaddedSamples change aussi et comme on a vu dans l&apos;issue #5988 des l&#233;g&#232;res modifications sont introduites.&lt;/p&gt;

&lt;p&gt;ah oui c&apos;est vrai. donc c&apos;est normal. je jette un coup d&apos;oeil au code et je passe en feedback&lt;/p&gt;</comment>
                            <comment id="32981" author="yuki.moritani" created="Tue, 13 Jun 2023 06:12:07 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2021-07-21 10:07:26:&lt;br/&gt;
merge request &lt;a href=&quot;https://gitlab.lam.fr/CPF/cpf-redshift/-/merge_requests/180&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;https://gitlab.lam.fr/CPF/cpf-redshift/-/merge_requests/180&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="32982" author="yuki.moritani" created="Tue, 13 Jun 2023 06:12:09 +0000"  >&lt;p&gt;Comment by Pierre-yves Chabaud on 2021-08-10 12:39:17:&lt;br/&gt;
Merged into @develop@ : @2060ccb@&lt;/p&gt;</comment>
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