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    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
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        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[REDMINE1D-261] [RM-8177] [Output] Some lines specified in results_specifications.csv are absent from output hdf5</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/REDMINE1D-261</link>
                <project id="11002" key="REDMINE1D">1D Redmine </project>
                    <description>&lt;p&gt;&lt;em&gt;&lt;font color=&quot;#505f79&quot;&gt; Created on 2023-07-11 14:30:02 by Fanny Dufresne. % Done: 50&lt;/font&gt;&lt;/em&gt;&lt;/p&gt;


&lt;p&gt;In results_specifications.csv, files some lines are present but not in the hdf5 output.&lt;/p&gt;

&lt;p&gt;Example:&lt;br/&gt;
FirstpassFittedTemplateDtM	model_parameters	True	candidate	fittedTpl.tplDtm	extrema_results	f8&lt;br/&gt;
FirstpassFittedTemplateMtM	model_parameters	True	candidate	fittedTpl.tplMtm	extrema_results	f8&lt;/p&gt;

&lt;p&gt;We could try to inventory those line and decide which ones we want to keep or not&lt;/p&gt;

&lt;p&gt;NB: to fix the presence of the two lines above, tplDtm and tplMtm are probably just missing from redshift.i struct CTplModelSolution&lt;/p&gt;

&lt;p&gt;+ add missing elements in results_specifications.csv (those which are Firstpass&amp;lt;element&amp;gt; but missing &amp;lt;element&amp;gt; from second pass)&lt;/p&gt;
</description>
                <environment></environment>
        <key id="23695">REDMINE1D-261</key>
            <summary>[RM-8177] [Output] Some lines specified in results_specifications.csv are absent from output hdf5</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="3" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/inprogress.png" description="This issue is being actively worked on at the moment by the assignee.">In Progress</status>
                    <statusCategory id="4" key="indeterminate" colorName="yellow"/>
                                    <resolution id="-1">Unresolved</resolution>
                                        <assignee username="r2j.migrate">Redmine-Jira Migtation</assignee>
                                    <reporter username="r2j.migrate">Redmine-Jira Migtation</reporter>
                        <labels>
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                <created>Tue, 11 Jul 2023 18:15:28 +0000</created>
                <updated>Tue, 30 Jan 2024 18:20:12 +0000</updated>
                                                                                <due></due>
                            <votes>0</votes>
                                    <watches>1</watches>
                                                                <comments>
                            <comment id="36903" author="r2j.migrate" created="Tue, 30 Jan 2024 18:19:49 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2023-07-17 12:32:31:&lt;br/&gt;
ah effectivement,&lt;/p&gt;

&lt;p&gt;dans le fichier d&apos;interface swig et dans la def de la classe @CTplModelSolution@  les membres @tplDtM@ et @tplMtM@ existent bien, mais dans le @result_specification.csv@ ils sont mal orthographi&#233;s (m minuscule) !&lt;/p&gt;

&lt;p&gt;On devrait aussi avoir les sorties suivantes manquantes avec le solver @TemplateFittingSolve@ et @LineModelSolve@:  @ContinuumMtM@ @ContinuumDtM@ qui correspondent aux m&#234;mes membres de la m&#234;me classe C++ et mal orthographi&#233;s aussi.&lt;/p&gt;

&lt;p&gt;sur l&apos;inventaire, le but est d&apos;&#234;tre exhaustif: tous les membres des classes d&#233;riv&#233;es de @COperatorResult@ ont vocation &#224; &#234;tre r&#233;cup&#233;rables dans la lib python, possiblement en mode &quot;extended&quot; qu&apos;il faut comprendre comme un mode &quot;debug&quot; .&lt;/p&gt;</comment>
                            <comment id="36904" author="r2j.migrate" created="Tue, 30 Jan 2024 18:19:56 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2023-07-17 12:43:33:&lt;br/&gt;
Didier Vibert wrote in #note-1:&lt;br/&gt;
&amp;gt;&lt;br/&gt;
&amp;gt; On devrait aussi avoir les sorties suivantes manquantes avec le solver @TemplateFittingSolve@ et @LineModelSolve@:  @ContinuumMtM@ @ContinuumDtM@ qui correspondent aux m&#234;mes membres de la m&#234;me classe C++ et mal orthographi&#233;s aussi.&lt;br/&gt;
&amp;gt; &lt;/p&gt;

&lt;p&gt;je confirme, ces sorties sont manquantes aussi.&lt;/p&gt;

&lt;p&gt;Finalement, la correction est simple: orthographier correctement ces sorties dans le fichier @results_specification.csv@&lt;/p&gt;</comment>
                            <comment id="36905" author="r2j.migrate" created="Tue, 30 Jan 2024 18:20:03 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2024-01-30 12:33:20:&lt;br/&gt;
rmq: &lt;br/&gt;
&amp;gt; + add missing elements in results_specifications.csv (those which are Firstpass&amp;lt;element&amp;gt; but missing &amp;lt;element&amp;gt; from second pass)&lt;/p&gt;

&lt;p&gt;the missing output @ContinuumSNR@ (of second pass) has been added in #8536&lt;/p&gt;

&lt;p&gt;But still need to check if there are others like that.&lt;/p&gt;</comment>
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