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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
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        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[REDMINE1D-16] [RM-6459] template ratio ism extinction should not be applied to amplitude of absorption lines...</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/REDMINE1D-16</link>
                <project id="11002" key="REDMINE1D">1D Redmine </project>
                    <description>&lt;p&gt;&lt;em&gt;&lt;font color=&quot;#505f79&quot;&gt; Created on 2021-04-16 16:37:15 by Didier Vibert. % Done: 100&lt;/font&gt;&lt;/em&gt;&lt;/p&gt;


&lt;p&gt;amplitude of absorption lines are unitless coefficient in &lt;span class=&quot;error&quot;&gt;&amp;#91;0,1&amp;#93;&lt;/span&gt; and the  effective spectral profile is &lt;/p&gt;

&lt;p&gt;s(lamda) = C(lambda)*(1-a)*LineProfile(lambda) where C(lambda) is the continuum, a is the fitted absorption amplitude and LineProfile is a normalized profile with maximum at 1.&lt;/p&gt;

&lt;p&gt;Thus the extinction of the continuum is operating on the absorptions lines, and it should not be applied a second time on the amplitude a. The current code for template ratio currently multiply the amplitude by the extinction low. It should not. &lt;/p&gt;</description>
                <environment></environment>
        <key id="16720">REDMINE1D-16</key>
            <summary>[RM-6459] template ratio ism extinction should not be applied to amplitude of absorption lines...</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="Issue is reviewed and ready to be merged and closed">Review Complete</status>
                    <statusCategory id="4" key="indeterminate" colorName="yellow"/>
                                    <resolution id="-1">Unresolved</resolution>
                                        <assignee username="r2j.migrate">Redmine-Jira Migtation</assignee>
                                    <reporter username="r2j.migrate">Redmine-Jira Migtation</reporter>
                        <labels>
                    </labels>
                <created>Fri, 4 Jun 2021 01:19:35 +0000</created>
                <updated>Fri, 9 Feb 2024 18:34:44 +0000</updated>
                                                                                <due></due>
                            <votes>0</votes>
                                    <watches>1</watches>
                                                                <comments>
                            <comment id="37146" author="r2j.migrate" created="Fri, 9 Feb 2024 18:33:24 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2024-01-12 16:54:48:&lt;br/&gt;
I let it in planif, I anticipate not too much conflict with #6028&lt;/p&gt;</comment>
                            <comment id="37147" author="r2j.migrate" created="Fri, 9 Feb 2024 18:33:31 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2024-01-16 16:09:33:&lt;br/&gt;
dans un premier temps, on se contente de modifier @CLineCatalogsTplRatio::InitLineCorrespondingAmplitudes@  pour que les amplitudes de l&apos;&#233;lement en absorption ne soient pas modifi&#233;e par l&apos;ism.&lt;/p&gt;

&lt;p&gt;dans un deuxi&#232;me temps, on peut effectuer un refacto (un peu plus complexe) pour &#233;viter de refitter l&apos;&#233;lement en abs pour les ratios identiques correspondant &#224; un index ism qui change. &lt;/p&gt;</comment>
                            <comment id="37148" author="r2j.migrate" created="Fri, 9 Feb 2024 18:33:40 +0000"  >&lt;p&gt;Comment by Gaelle Daste on 2024-01-26 12:25:06:&lt;br/&gt;
Voici les ITs full compar&#233;s avec develop :&lt;br/&gt;
/net/CESAM/amazed/gdaste/tests/fix_issue_6459&lt;/p&gt;

&lt;p&gt;Ca concerne le point &quot;dans un premier temps&quot; de ta note&lt;/p&gt;

&lt;p&gt;MR : &lt;a href=&quot;https://gitlab.lam.fr/CPF/cpf-redshift/-/merge_requests/578&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;https://gitlab.lam.fr/CPF/cpf-redshift/-/merge_requests/578&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="37149" author="r2j.migrate" created="Fri, 9 Feb 2024 18:33:52 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2024-02-01 14:13:37:&lt;br/&gt;
@gdaste stp tu peux cr&#233;er un ticket pour traiter le refacto propos&#233; dans un &quot;deuxi&#232;me temps&quot; #note-15 si on ne le traite pas ici. merci&lt;/p&gt;</comment>
                            <comment id="37150" author="r2j.migrate" created="Fri, 9 Feb 2024 18:33:57 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2024-02-01 15:25:36:&lt;br/&gt;
ok pour le code. Dis-moi d&#232;s que tu as les IT que je regarde avant de passer en feedback&lt;/p&gt;</comment>
                            <comment id="37151" author="r2j.migrate" created="Fri, 9 Feb 2024 18:34:03 +0000"  >&lt;p&gt;Comment by Gaelle Daste on 2024-02-02 10:29:01:&lt;br/&gt;
ITs full apr&#232;s la derni&#232;re modif : /net/CESAM/amazed/gdaste/tests/fix_issue_6459&lt;/p&gt;</comment>
                            <comment id="37152" author="r2j.migrate" created="Fri, 9 Feb 2024 18:34:23 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2024-02-05 15:04:23:&lt;br/&gt;
Gaelle Daste wrote in #note-22:&lt;br/&gt;
&amp;gt; ITs full apr&#232;s la derni&#232;re modif : /net/CESAM/amazed/gdaste/tests/fix_issue_6459&lt;/p&gt;

&lt;p&gt;ok c&apos;est bon.&lt;/p&gt;</comment>
                            <comment id="37153" author="r2j.migrate" created="Fri, 9 Feb 2024 18:34:34 +0000"  >&lt;p&gt;Comment by Pierre-yves Chabaud on 2024-02-09 14:06:52:&lt;br/&gt;
Merged into @develop@ (@5ad7c2d0@)&lt;/p&gt;</comment>
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