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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[REDMINE1D-126] [RM-7712] implement masked/flagged spectrum</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/REDMINE1D-126</link>
                <project id="11002" key="REDMINE1D">1D Redmine </project>
                    <description>&lt;p&gt;&lt;em&gt;&lt;font color=&quot;#505f79&quot;&gt; Created on 2022-12-12 11:14:35 by Didier Vibert. % Done: 0&lt;/font&gt;&lt;/em&gt;&lt;/p&gt;


&lt;p&gt;2 use cases:&lt;/p&gt;

&lt;ol&gt;
	&lt;li&gt;to be able to use the fft templatefitting with flagged samples&lt;br/&gt;
today the client is removing the flagged samples which is incorrect if we rebin the spectrum (for logsampling), or invalidate the regular log-sampliing&lt;/li&gt;
&lt;/ol&gt;


&lt;ol&gt;
	&lt;li&gt;to carry inside the rebined templates (derived class of CSpectrum) a mask of the lines when fitting the template for the linemodel. &lt;del&gt;This refactoring will make it easier to implement the multi-obs for the linemodel (#6028) to not propagate through the whole hierarchy of calls a vector of vector of masks.&lt;/del&gt; &lt;b&gt;EDIT&lt;/b&gt; this is not relevant anymore, since the implementation of the maskBuilder class&lt;/li&gt;
&lt;/ol&gt;


&lt;p&gt;TODO:&lt;/p&gt;
&lt;ul&gt;
	&lt;li&gt;add a member mask inside CSpectralAxis (TBC)&lt;/li&gt;
	&lt;li&gt;implement the CRebin class (and CSpectrum::rebin) with a mask (mask the interpolated samples computed from masked samples)&lt;/li&gt;
	&lt;li&gt;implement the templatefittinglog operator with masks&lt;/li&gt;
	&lt;li&gt;remove the mask from templatefitting operator methods, use instead the intersection of both masks (the one in the spectrum and the one in the template)&lt;/li&gt;
&lt;/ul&gt;
</description>
                <environment></environment>
        <key id="23511">REDMINE1D-126</key>
            <summary>[RM-7712] implement masked/flagged spectrum</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="1" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/open.png" description="The issue is open and ready for the assignee to start work on it.">Open</status>
                    <statusCategory id="2" key="new" colorName="blue-gray"/>
                                    <resolution id="-1">Unresolved</resolution>
                                        <assignee username="r2j.migrate">Redmine-Jira Migtation</assignee>
                                    <reporter username="r2j.migrate">Redmine-Jira Migtation</reporter>
                        <labels>
                    </labels>
                <created>Tue, 13 Jun 2023 05:23:40 +0000</created>
                <updated>Wed, 17 Jan 2024 18:28:46 +0000</updated>
                                                                                <due></due>
                            <votes>0</votes>
                                    <watches>2</watches>
                                                                <comments>
                            <comment id="36689" author="r2j.migrate" created="Wed, 17 Jan 2024 18:27:48 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2024-01-11 14:42:52:&lt;br/&gt;
@aallaoui tu veux faire &#231;a dans le cadre de #6028 (dans ce cas liste l&#224; en sous-t&#226;che) ou on fera apr&#232;s ? &lt;/p&gt;</comment>
                            <comment id="36690" author="r2j.migrate" created="Wed, 17 Jan 2024 18:27:56 +0000"  >&lt;p&gt;Comment by Ali Allaoui on 2024-01-16 14:24:59:&lt;br/&gt;
D&apos;apr&#232;s ce que je comprends c&apos;est clairement une sous-t&#226;che de #6028 qui bloquerait une autre sous-t&#226;che &#224; d&#233;finir &quot;Implement fft templatefitting in full multiobs&quot;&lt;/p&gt;</comment>
                            <comment id="36691" author="r2j.migrate" created="Wed, 17 Jan 2024 18:28:27 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2024-01-16 14:34:51:&lt;br/&gt;
Ali Allaoui wrote in #note-4:&lt;br/&gt;
&amp;gt; D&apos;apr&#232;s ce que je comprends c&apos;est clairement une sous-t&#226;che de #6028 qui bloquerait une autre sous-t&#226;che &#224; d&#233;finir &quot;Implement fft templatefitting in full multiobs&quot;&lt;/p&gt;

&lt;p&gt;ok je la bascule en sous-tache de 6028 pour l&apos;impl&#233;mentation du mask dans CSpectrum et le passage du masque des raies pour le linemodel.&lt;/p&gt;

&lt;p&gt;pour le reste (template fitting fft et masque) ou peut cr&#233;er une nouvelle issue qui est d&#233;pendante (bloqu&#233;e par) celle-ci mais pas en sous-tache du multi-obs. En fait, il s&apos;agit plut&#244;t de mettre &#224; jour #5653&lt;/p&gt;

&lt;p&gt;note: cette issue n&apos;a rien avoir avec &quot;Implement fft templatefitting in full multiobs&quot; qui est encore autre chose.&lt;/p&gt;</comment>
                            <comment id="36692" author="r2j.migrate" created="Wed, 17 Jan 2024 18:28:35 +0000"  >&lt;p&gt;Comment by Didier Vibert on 2024-01-16 15:25:35:&lt;br/&gt;
suite &#224; discussion avec @aallaoui la d&#233;pendance avec le full multi-obs mentionn&#233; dans la description n&apos;a plus lieu d&apos;&#234;tre, en particulier avec l&apos;impl&#233;mentation d&#233;j&#224; merg&#233;e du maskbuilder.&lt;/p&gt;</comment>
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