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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-952] Spurious features appear in merged spectra</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-952</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;For &lt;tt&gt;&apos;visit&apos;: 69546, &apos;arm&apos;: &apos;r&apos;, &apos;spectrograph&apos;: 1&lt;/tt&gt; there are features in the merged spectra that don&apos;t appear in the arm spectra.  Please investigate and fix.&lt;/p&gt;

&lt;p&gt;This is using the &lt;tt&gt;CALIB-PFI-20211108&lt;/tt&gt; calibs (copied to Hilo)&lt;/p&gt;</description>
                <environment></environment>
        <key id="18371">PIPE2D-952</key>
            <summary>Spurious features appear in merged spectra</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="rhl">rhl</reporter>
                        <labels>
                    </labels>
                <created>Sat, 20 Nov 2021 05:08:22 +0000</created>
                <updated>Mon, 20 Dec 2021 23:35:29 +0000</updated>
                            <resolved>Mon, 20 Dec 2021 23:35:29 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>2</watches>
                                                                <comments>
                            <comment id="30225" author="rhl" created="Mon, 20 Dec 2021 23:03:26 +0000"  >&lt;p&gt;Looks much better.  What was the problem?  Calibs?&lt;/p&gt;</comment>
                            <comment id="30226" author="price" created="Mon, 20 Dec 2021 23:03:34 +0000"  >&lt;p&gt;Between &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-948&quot; title=&quot;reduceArc: restore the use of continuum as well as arc data&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-948&quot;&gt;&lt;del&gt;PIPE2D-948&lt;/del&gt;&lt;/a&gt; (and new calibs &lt;tt&gt;CALIB-PFI-20211220&lt;/tt&gt;) and &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-799&quot; title=&quot;Correct for Jacobian when resampling&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-799&quot;&gt;&lt;del&gt;PIPE2D-799&lt;/del&gt;&lt;/a&gt; and possibly &lt;tt&gt;isr.doApplyGains=True&lt;/tt&gt;, this appears to have been resolved. I&apos;ll have a quick play to see if I can determine which one is responsible.&lt;/p&gt;

&lt;p&gt;&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/15056/15056_pipe2d-952-fixed.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/span&gt;&lt;/p&gt;

&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
(lsst-scipipe) pprice@tiger2-sumire:/scratch/pprice/pipe2d-952 $ reduceExposure.py /projects/HSC/PFS/Subaru --calib /projects/HSC/PFS/Subaru/CALIB-PFI-20211220 --rerun price/pipe2d-952 --id visit=69546 -c isr.doFlat=False isr.doApplyGains=True repair.doCosmicRay=False doAdjustDetectorMap=False -j 2
(lsst-scipipe) pprice@tiger2-sumire:/scratch/pprice/pipe2d-952 $ mergeArms.py /projects/HSC/PFS/Subaru --calib /projects/HSC/PFS/Subaru/CALIB-PFI-20211220 --rerun price/pipe2d-952 --id visit=69546 -c doSubtractSky1d=False

&amp;gt;&amp;gt;&amp;gt; from lsst.daf.persistence &lt;span class=&quot;code-keyword&quot;&gt;import&lt;/span&gt; Butler
&amp;gt;&amp;gt;&amp;gt; butler = Butler(&lt;span class=&quot;code-quote&quot;&gt;&quot;/projects/HSC/PFS/Subaru/rerun/price/pipe2d-952&quot;&lt;/span&gt;)
&amp;gt;&amp;gt;&amp;gt; merged = butler.get(&lt;span class=&quot;code-quote&quot;&gt;&quot;pfsMerged&quot;&lt;/span&gt;, visit=69546)
&amp;gt;&amp;gt;&amp;gt; fig, axes = merged.plot(fiberId=[409, 501], show=False)
&amp;gt;&amp;gt;&amp;gt; axes.set_xlim(680, 740)
&amp;gt;&amp;gt;&amp;gt; axes.set_ylim(-300, 700)
&amp;gt;&amp;gt;&amp;gt; axes.legend()
&amp;gt;&amp;gt;&amp;gt; fig.show()
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;</comment>
                            <comment id="30227" author="price" created="Mon, 20 Dec 2021 23:35:29 +0000"  >&lt;p&gt;Fixed by the reworked normalisation code in &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-799&quot; title=&quot;Correct for Jacobian when resampling&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-799&quot;&gt;&lt;del&gt;PIPE2D-799&lt;/del&gt;&lt;/a&gt;.&lt;/p&gt;</comment>
                    </comments>
                    <attachments>
                            <attachment id="14488" name="pfsArm.png" size="237128" author="rhl" created="Sat, 20 Nov 2021 05:02:51 +0000"/>
                            <attachment id="14489" name="pfsMerged.png" size="209718" author="rhl" created="Sat, 20 Nov 2021 05:02:50 +0000"/>
                            <attachment id="15056" name="pipe2d-952-fixed.png" size="33358" author="price" created="Mon, 20 Dec 2021 23:00:10 +0000"/>
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