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<channel>
    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
    </build-info>


<item>
            <title>[PIPE2D-875] Provide missing b-band dark, fiberprofiles and detectorMap SuNSS calibs</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-875</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;We are missing b-band &lt;tt&gt;DARK&lt;/tt&gt;, &lt;tt&gt;FIBERPROFILES&lt;/tt&gt; and &lt;tt&gt;DETECTORMAP&lt;/tt&gt; calibs for the official SuNSS calib repository under &lt;tt&gt;/projects/HSC/PFS/SuNSS-2021-06-16&lt;/tt&gt;. &lt;/p&gt;

&lt;p&gt;Please provide these.&lt;/p&gt;</description>
                <environment></environment>
        <key id="16975">PIPE2D-875</key>
            <summary>Provide missing b-band dark, fiberprofiles and detectorMap SuNSS calibs</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="hassan">hassan</assignee>
                                    <reporter username="hassan">hassan</reporter>
                        <labels>
                            <label>SuNSS</label>
                            <label>calib-mgmt</label>
                    </labels>
                <created>Fri, 30 Jul 2021 02:27:42 +0000</created>
                <updated>Tue, 28 Sep 2021 14:47:09 +0000</updated>
                            <resolved>Mon, 27 Sep 2021 20:56:50 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>2</watches>
                                                                <comments>
                            <comment id="22102" author="hassan" created="Mon, 27 Sep 2021 20:56:40 +0000"  >&lt;p&gt;Dark &lt;tt&gt;pfsDark-2021-01-15-041400-b1.fits&lt;/tt&gt;, fiberProfiles &lt;tt&gt;pfsFiberProfiles-2021-06-11-063050-b1.fits&lt;/tt&gt; and detectorMap &lt;tt&gt;pfsDetectorMap-063091-b1.fits&lt;/tt&gt; added to &lt;tt&gt;/projects/HSC/PFS/Subaru/CALIB-SuNSS-2021-06-16&lt;/tt&gt; CALIB.&lt;/p&gt;

&lt;p&gt;All processing done using &lt;tt&gt;pfs_pipe2d w.2021.39&lt;/tt&gt;.&lt;/p&gt;

&lt;p&gt;Firstly, the dark was ingested:&lt;/p&gt;

&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
ingestPfsCalibs.py /projects/HSC/PFS/Subaru/ --calib /projects/HSC/PFS/CALIB-SuNSS-2021-06-16 /projects/HSC/PFS/Subaru/CALIB-SuNSS-2021-05-04/DARK/pfsDark-2021-01-15-041400-b1.fits --mode=copy --validity 1000 --config clobber=True
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;

&lt;p&gt;Then a DCB-derived detectormap &lt;tt&gt;pfsDetectorMap-045744-b1.fits&lt;/tt&gt; was ingested as a basis:&lt;/p&gt;

&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
ingestPfsCalibs.py /projects/HSC/PFS/Subaru/ --calib /projects/HSC/PFS/Subaru/CALIB-SuNSS-2021-06-16
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;

&lt;p&gt;Then the fiberProfiles were constructed:&lt;/p&gt;

&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
constructFiberProfiles.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-SuNSS-2021-06-16/ --rerun=hassans/pipe2d-875/fiberProfiles_b1 --doraise --cores=1 --id visit=63050..63061 arm=b -c isr.doFlat=False
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;

&lt;p&gt;Finally, a detectorMap was generated using SuNSS exposures of Subaru room lights and ingested.&lt;/p&gt;

&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
 reduceArc.py /projects/HSC/PFS/Subaru/ --calib /projects/HSC/PFS/Subaru/CALIB-SuNSS-2021-06-16 --rerun /projects/HSC/PFS/Subaru/rerun/hassans/pipe2d-875/reduceArc_b1_roomlightLinesOnly --id visit=63091..63100 arm=b --configfile=/scratch/hassans/calib/config/reducearc_pipe2d875_roomlights.config --longlog &amp;gt; /scratch/hassans/log.reducearc_b1_pipe2d875_roomlightsOnly

ingestPfsCalibs.py /projects/HSC/PFS/Subaru/ --calib /projects/HSC/PFS/Subaru/CALIB-SuNSS-2021-06-16/ /projects/HSC/PFS/Subaru/rerun/hassans/pipe2d-875/reduceArc_b1_roomlightLinesOnly/DETECTORMAP/pfsDetectorMap-063091-b1.fits --mode=copy --validity 1000 --config clobber=True
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;

&lt;p&gt;The line list was limited to 6 bright lines identified by eye (see attached subaruRoomLights.txt). This provided a good fit compared with using the full range of lines available in the &apos;standard&apos; line lists provided in &lt;tt&gt;obs_pfs&lt;/tt&gt;, which previous runs lead to a number of incorrect lines being identified, affecting the quality of the fit. This is expected to be addressed once the relative line intensities for each light source are updated the line list set. This is the subject of future work.&lt;/p&gt;

&lt;p&gt;The fit quality looks good, with the x and y RMS errors being less than 0.03 px. Visual inspection of key lines (see screenshots attached) provide a sanity check of the fit.&lt;/p&gt;

&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
INFO  2021-09-27T13:17:08.460-0400 reduceArc.fitDetectorMap ()(fitDistortedDetectorMap.py:556)- Final fit: chi2=34787.562814 dof=8540 xRMS=0.023609 yRMS=0.023602 (0.001609 nm) from 4300/9381 lines
INFO  2021-09-27T13:17:08.471-0400 reduceArc.fitDetectorMap ()(fitDistortedDetectorMap.py:562)- Fit quality from reserved lines: chi2=137824.630717 xRMS=0.044730 yRMS=0.043179 (0.002944 nm) from 1042 lines (10.0%)
INFO  2021-09-27T13:17:08.475-0400 reduceArc.fitDetectorMap ()(fitDistortedDetectorMap.py:709)- Softening errors by x=0.023144, y=0.023065 pixels (0.001573 nm) to yield chi^2/dof=1
INFO  2021-09-27T13:17:08.498-0400 reduceArc.fitDetectorMap ()(fitDistortedDetectorMap.py:715)- Softened fit: chi2=8538.190491 dof=8540 xRMS=0.023895 yRMS=0.023926 (0.001631 nm) from 4300 lines
INFO  2021-09-27T13:17:08.510-0400 reduceArc.fitDetectorMap ()(fitDistortedDetectorMap.py:721)- Softened fit quality from reserved lines: chi2=31172.169360 xRMS=0.044718 yRMS=0.043373 (0.002957 nm) from 1042 lines
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;</comment>
                            <comment id="22140" author="price" created="Tue, 28 Sep 2021 14:45:02 +0000"  >&lt;p&gt;Did you iterate on the fiberProfiles and detectorMap? The two are coupled.&lt;/p&gt;</comment>
                            <comment id="22141" author="price" created="Tue, 28 Sep 2021 14:47:09 +0000"  >&lt;p&gt;Also, all the slit offsets are zero, so you need to run with &lt;tt&gt;&amp;#45;&amp;#45;config fitDetectorMap.doSlitOffsets=True&lt;/tt&gt;.&lt;/p&gt;</comment>
                    </comments>
                <issuelinks>
                            <issuelinktype id="10002">
                    <name>Duplicate</name>
                                                                <inwardlinks description="is duplicated by">
                                        <issuelink>
            <issuekey id="15298">PIPE2D-727</issuekey>
        </issuelink>
                            </inwardlinks>
                                    </issuelinktype>
                    </issuelinks>
                <attachments>
                            <attachment id="14100" name="reducearc_pipe2d875_roomlights.config" size="321" author="hassan" created="Mon, 27 Sep 2021 20:41:24 +0000"/>
                            <attachment id="14103" name="Screen Shot 2021-09-27 at 4.29.55 PM.png" size="164695" author="hassan" created="Mon, 27 Sep 2021 20:41:59 +0000"/>
                            <attachment id="14102" name="Screen Shot 2021-09-27 at 4.31.10 PM.png" size="105958" author="hassan" created="Mon, 27 Sep 2021 20:41:59 +0000"/>
                            <attachment id="14101" name="subaruRoomLights.txt" size="733" author="hassan" created="Mon, 27 Sep 2021 20:41:24 +0000"/>
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