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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-86] Change pixel centers from [0.5,0.5] to [0,0]</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-86</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;Currently the pipeline assumes that pixel centers are at &lt;span class=&quot;error&quot;&gt;&amp;#91;0.5,0.5&amp;#93;&lt;/span&gt; what is non-standard and can lead to confusion in ds9 and possibly in other packages. Please set the pixel centers to the standard &lt;span class=&quot;error&quot;&gt;&amp;#91;0,0&amp;#93;&lt;/span&gt;&lt;/p&gt;</description>
                <environment></environment>
        <key id="11162">PIPE2D-86</key>
            <summary>Change pixel centers from [0.5,0.5] to [0,0]</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="3" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/major.svg">Major</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="aritter">aritter</assignee>
                                    <reporter username="aritter">aritter</reporter>
                        <labels>
                    </labels>
                <created>Wed, 28 Sep 2016 21:24:36 +0000</created>
                <updated>Thu, 22 Jun 2017 20:02:09 +0000</updated>
                            <resolved>Thu, 22 Jun 2017 20:02:09 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>3</watches>
                                                                <comments>
                            <comment id="11404" author="swinbank" created="Tue, 4 Oct 2016 17:13:05 +0000"  >&lt;p&gt;Hey Andreas &#8211; what is &quot;the pipeline&quot; in this context? Is this just an assumption embedded in drp_stella, or will you be proposing changes to LSST code?&lt;/p&gt;</comment>
                            <comment id="11409" author="aritter" created="Tue, 4 Oct 2016 20:45:03 +0000"  >&lt;p&gt;drp_stella only. LSST I believe has the pixel centers at &lt;span class=&quot;error&quot;&gt;&amp;#91;0,0&amp;#93;&lt;/span&gt;&lt;/p&gt;</comment>
                            <comment id="11918" author="aritter" created="Mon, 27 Feb 2017 18:57:16 +0000"  >&lt;p&gt;I compared the new version to the old one and made sure that the resulting spectra and RMS of the wavelength solution are identical for both PIXEL_CENTER = 0.0 and 0.5.&lt;/p&gt;

&lt;p&gt;Note that I have filed the ticket &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-162&quot; title=&quot;Confirm that PSF code works with new PixelCenter&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-162&quot;&gt;&lt;del&gt;PIPE2D-162&lt;/del&gt;&lt;/a&gt; to go through the PSF code &amp;amp; decide which parts should be kept. I also extended the ticket &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-129&quot; title=&quot;Move code in SpectraTemplates.hpp to Spectra.cc. Same for PSF&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-129&quot;&gt;&lt;del&gt;PIPE2D-129&lt;/del&gt;&lt;/a&gt; (move code from `SpectrumTemplates.hpp` to `Spectra.cc`) to `PSFTemplates.hpp`.&lt;/p&gt;</comment>
                            <comment id="11924" author="swinbank" created="Fri, 3 Mar 2017 17:23:54 +0000"  >&lt;p&gt;I am not &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=price&quot; class=&quot;user-hover&quot; rel=&quot;price&quot;&gt;price&lt;/a&gt; (to everybody&apos;s great relief, I&apos;m sure), but my suggestion would be that you move all the &quot;cleanup&quot; work here onto a separate ticket. There are currently 28 separate commits in total, of which only about 7 or 8 seem relevant to the work actually being ticketed. Cleaning up formatting etc is nice, but a mountain of changes like this is much harder to review than a small, focused change.&lt;/p&gt;</comment>
                            <comment id="11926" author="aritter" created="Fri, 10 Mar 2017 21:41:17 +0000"  >&lt;p&gt;Here is an image showing the FiberTrace centers and limits:&lt;br/&gt;
 &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;10501_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/10501/10501_figure_1.png&quot; title=&quot;figure_1.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;10501&quot; file-preview-title=&quot;figure_1.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/10500/_thumb_10500.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;

&lt;p&gt;And here an image showing a PSF extracted from multiple dithered PSF representations in one FiberTrace:&lt;br/&gt;
 &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;10501_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/10501/10501_figure_1.png&quot; title=&quot;figure_1.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;10501&quot; file-preview-title=&quot;figure_1.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/10501/_thumb_10501.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;</comment>
                            <comment id="11927" author="aritter" created="Fri, 10 Mar 2017 21:42:59 +0000"  >&lt;p&gt;Currently the integration test in tests/testDRP.py still fails on modern Mac OS X due to SIP. This is getting fixed in &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-53&quot; title=&quot;tests/testDRP.py will fail on modern Mac OS&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-53&quot;&gt;&lt;del&gt;PIPE2D-53&lt;/del&gt;&lt;/a&gt; which is currently in review. I can wait for &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-53&quot; title=&quot;tests/testDRP.py will fail on modern Mac OS&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-53&quot;&gt;&lt;del&gt;PIPE2D-53&lt;/del&gt;&lt;/a&gt; to get merged into master before I resubmit this ticket for review, or I could resubmit it now...?&lt;/p&gt;</comment>
                            <comment id="12227" author="rhl" created="Tue, 6 Jun 2017 21:45:53 +0000"  >&lt;p&gt;Does this ticket now pass all its tests?&lt;/p&gt;

&lt;p&gt;Also, looking at the changesets I wasn&apos;t sure if the fiber trace code still uses (0.0, 0.0) as the bottom left of a pixel internally.  Does it?  If so, please file a ticket to fix that.&lt;/p&gt;</comment>
                            <comment id="12241" author="aritter" created="Thu, 8 Jun 2017 22:36:51 +0000"  >&lt;p&gt;I strongly believe that nothing uses (0.0, 0.0) as the bottom left of a pixel anymore, not even internally. All tests are passing.&lt;/p&gt;</comment>
                            <comment id="12271" author="aritter" created="Fri, 16 Jun 2017 19:08:24 +0000"  >&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=rhl&quot; class=&quot;user-hover&quot; rel=&quot;rhl&quot;&gt;rhl&lt;/a&gt; Can you please send me the lines you wanted me look at?&lt;/p&gt;</comment>
                            <comment id="12283" author="rhl" created="Mon, 19 Jun 2017 18:53:04 +0000"  >&lt;p&gt;My concern was the routine &lt;tt&gt;ccdToFiberTraceCoordinates&lt;/tt&gt; but now that I look more carefully I see that it&apos;s not converting between CCD and internal FiberTrace coordinates so that&apos;s OK.&lt;/p&gt;

&lt;p&gt;I don&apos;t understand why you need this function, as it looks to me like something that would have been naturally handled via a definition of &lt;tt&gt;dataXY::operator-&lt;/tt&gt;, but that&apos;s out of scope.  Actually, it only seems to be used in the PSF code which is slated for removal anyway so we definitely don&apos;t want to fix it.&lt;/p&gt;
</comment>
                            <comment id="12284" author="aritter" created="Mon, 19 Jun 2017 19:24:29 +0000"  >&lt;p&gt;Good to merge then?&lt;/p&gt;</comment>
                            <comment id="12288" author="rhl" created="Wed, 21 Jun 2017 15:40:44 +0000"  >&lt;p&gt;Yes.  I thought that was implicit from the comment, but apparently not.&lt;/p&gt;</comment>
                            <comment id="12290" author="aritter" created="Thu, 22 Jun 2017 20:02:09 +0000"  >&lt;p&gt;merged into master&lt;/p&gt;</comment>
                    </comments>
                <issuelinks>
                            <issuelinktype id="10000">
                    <name>Blocks</name>
                                            <outwardlinks description="blocks">
                                        <issuelink>
            <issuekey id="11517">PIPE2D-171</issuekey>
        </issuelink>
                            </outwardlinks>
                                                        </issuelinktype>
                            <issuelinktype id="10003">
                    <name>Relates</name>
                                            <outwardlinks description="relates to">
                                        <issuelink>
            <issuekey id="11512">PIPE2D-166</issuekey>
        </issuelink>
            <issuelink>
            <issuekey id="11513">PIPE2D-167</issuekey>
        </issuelink>
            <issuelink>
            <issuekey id="11516">PIPE2D-170</issuekey>
        </issuelink>
            <issuelink>
            <issuekey id="11517">PIPE2D-171</issuekey>
        </issuelink>
            <issuelink>
            <issuekey id="11507">PIPE2D-162</issuekey>
        </issuelink>
            <issuelink>
            <issuekey id="11511">PIPE2D-165</issuekey>
        </issuelink>
                            </outwardlinks>
                                                        </issuelinktype>
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                <attachments>
                            <attachment id="10501" name="figure_1.png" size="204686" author="aritter" created="Fri, 10 Mar 2017 21:39:55 +0000"/>
                            <attachment id="10500" name="figure_2.png" size="107475" author="aritter" created="Fri, 10 Mar 2017 21:39:42 +0000"/>
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