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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-779] Improve CR rejection in SuNSS</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-779</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;After we resolve and merge &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-725&quot; title=&quot;Cosmic ray detection/masking fails for SuNSS data&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-725&quot;&gt;&lt;del&gt;PIPE2D-725&lt;/del&gt;&lt;/a&gt;, we still need to work on the CR algorithms.  Most importantly we need to improve the fraction of detected CRs (although it&apos;s not bad already), but it&apos;s also worth thinking if we&apos;d gain from better CR interpolation.&lt;/p&gt;</description>
                <environment></environment>
        <key id="15459">PIPE2D-779</key>
            <summary>Improve CR rejection in SuNSS</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="1" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/open.png" description="The issue is open and ready for the assignee to start work on it.">Open</status>
                    <statusCategory id="2" key="new" colorName="blue-gray"/>
                                    <resolution id="-1">Unresolved</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="rhl">rhl</reporter>
                        <labels>
                    </labels>
                <created>Fri, 12 Mar 2021 15:13:04 +0000</created>
                <updated>Thu, 13 Jan 2022 14:57:15 +0000</updated>
                                                                                <due></due>
                            <votes>0</votes>
                                    <watches>2</watches>
                                                                <comments>
                            <comment id="18846" author="rhl" created="Fri, 12 Mar 2021 15:14:25 +0000"  >&lt;p&gt;Here&apos;s an amusing example, where we find the muon between the traces.   &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13433_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13433/13433_arcs-as-crs.png&quot; title=&quot;arcs-as-crs.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13433&quot; file-preview-title=&quot;arcs-as-crs.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13413/_thumb_13413.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;</comment>
                            <comment id="18940" author="rhl" created="Fri, 19 Mar 2021 18:36:12 +0000"  >&lt;p&gt;&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13435_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13435/13435_image+%287%29.png&quot; title=&quot;image (7).png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13435&quot; file-preview-title=&quot;image (7).png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13433/_thumb_13433.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &#160;is an example of arc lines being labelled as CRs (this is using &lt;tt&gt;makeCRMosaic&lt;/tt&gt; from &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-773&quot; title=&quot;Make small improvements to utilities&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-773&quot;&gt;&lt;del&gt;PIPE2D-773&lt;/del&gt;&lt;/a&gt;. &#160;Each CR appears in two panels, raw on the left, calexp on the right. &#160;The axis labels are in mosaic units, but the utility provides a mouse-over in calexp coordinates). &#160;This is with &lt;tt&gt;repair.interp.modelPsf.defaultFwhm=2.5&lt;/tt&gt;. &#160;If I lower this to &lt;tt&gt;2.25&lt;/tt&gt; the problem goes away, but we seem to miss real Cosmics&lt;/p&gt;</comment>
                            <comment id="18941" author="rhl" created="Fri, 19 Mar 2021 18:43:15 +0000"  >&lt;p&gt;Here&apos;s a rather worrying presumed-cosmic ray  &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13434_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13434/13434_image+%288%29.png&quot; title=&quot;image (8).png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13434&quot; file-preview-title=&quot;image (8).png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13435/_thumb_13435.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; .&#160; It&apos;s flagged as CR (green pixels at the bottom) (but that may just because it&apos;s so bright, and we &quot;should&quot; be labelling the sky lines too).&#160; The cross-section is slightly&#160;&lt;em&gt;wider&lt;/em&gt;&#160;than an arc line ( &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13436_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13436/13436_missed-CRs.png&quot; title=&quot;missed-CRs.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13436&quot; file-preview-title=&quot;missed-CRs.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13434/_thumb_13434.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; ), so it&apos;s going to be hard to get things like this out of the data (although it&apos;s centroid isn&apos;t consistent with being on any fibre)&lt;/p&gt;</comment>
                            <comment id="18942" author="price" created="Fri, 19 Mar 2021 18:52:08 +0000"  >&lt;p&gt;I think combining multiple exposures is going to be an important part of our CR mitigation strategy, because we&apos;re not going to be able to find all of them based on morphology alone.&lt;/p&gt;</comment>
                            <comment id="18944" author="rhl" created="Fri, 19 Mar 2021 19:15:24 +0000"  >&lt;p&gt;I don&apos;t disagree with Paul, but we may not always have the luxury of CR splits.&lt;/p&gt;</comment>
                            <comment id="18945" author="rhl" created="Fri, 19 Mar 2021 19:16:25 +0000"  >&lt;p&gt;Here&apos;s an example of CRs we&apos;re missing with &lt;tt&gt;repair.interp.modelPsf.defaultFwhm=2.25&lt;/tt&gt;  &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13521_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13521/13521_image+%289%29.png&quot; title=&quot;image (9).png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13521&quot; file-preview-title=&quot;image (9).png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13436/_thumb_13436.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;</comment>
                            <comment id="19081" author="rhl" created="Thu, 1 Apr 2021 20:50:11 +0000"  >&lt;p&gt;And here&apos;s another fat trail &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13522_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13522/13522_Untitled+40.png&quot; title=&quot;Untitled 40.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13522&quot; file-preview-title=&quot;Untitled 40.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13521/_thumb_13521.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; (note the muon tracks in the background).  I&apos;m beginning to worry if we&apos;re not fully depleting the CCD, as I don&apos;t remember things like this from HSC (or LSST, but it has thinner devices and smaller pixels).&lt;/p&gt;</comment>
                            <comment id="19096" author="rhl" created="Mon, 5 Apr 2021 18:24:01 +0000"  >&lt;p&gt;Here&apos;s another fascinating event:  &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13528_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13528/13528_Untitled+41.png&quot; title=&quot;Untitled 41.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13528&quot; file-preview-title=&quot;Untitled 41.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13522/_thumb_13522.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;</comment>
                            <comment id="19123" author="rhl" created="Fri, 9 Apr 2021 19:40:00 +0000"  >&lt;p&gt;Here&apos;s a case of a CR masquerading as part of an emission line.  &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13529_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13529/13529_Untitled+42.png&quot; title=&quot;Untitled 42.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13529&quot; file-preview-title=&quot;Untitled 42.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13528/_thumb_13528.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;br/&gt;
Here we detected the CR, but there&apos;s flux in the extracted spectrum;  here&apos;s  &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13538_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13538/13538_Untitled+8b.png&quot; title=&quot;Untitled 8b.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13538&quot; file-preview-title=&quot;Untitled 8b.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13529/_thumb_13529.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;  the spectrum, but only the blue-side is labelled as a CR.&lt;/p&gt;</comment>
                            <comment id="19159" author="rhl" created="Sat, 17 Apr 2021 14:22:45 +0000"  >&lt;p&gt;Here are three of these fat events in one frame&#160;  &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13540_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13540/13540_46475-CR-img.png&quot; title=&quot;46475-CR-img.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13540&quot; file-preview-title=&quot;46475-CR-img.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13536/_thumb_13536.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;  &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13539_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13539/13539_46475-CR-spec.png&quot; title=&quot;46475-CR-spec.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13539&quot; file-preview-title=&quot;46475-CR-spec.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13538/_thumb_13538.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;</comment>
                            <comment id="19160" author="rhl" created="Sat, 17 Apr 2021 15:17:32 +0000"  >&lt;p&gt;And here&apos;s a CR that&apos;s just to the left of the trace at the position of an emission line.&#160; &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13539_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13539/13539_46475-CR-spec.png&quot; title=&quot;46475-CR-spec.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13539&quot; file-preview-title=&quot;46475-CR-spec.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13540/_thumb_13540.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13539_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13539/13539_46475-CR-spec.png&quot; title=&quot;46475-CR-spec.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13539&quot; file-preview-title=&quot;46475-CR-spec.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13539/_thumb_13539.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;</comment>
                            <comment id="21656" author="price" created="Wed, 7 Jul 2021 15:28:51 +0000"  >&lt;p&gt;Do you have an algorithm in mind for finding these CRs, or is this a research project?&lt;/p&gt;</comment>
                    </comments>
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                            <attachment id="13413" name="46241-b1-CR.png" size="100630" author="rhl" created="Fri, 12 Mar 2021 15:13:40 +0000"/>
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                            <attachment id="13433" name="arcs-as-crs.png" size="153058" author="rhl" created="Fri, 19 Mar 2021 18:33:26 +0000"/>
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