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        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-776] Unexplained BAD_DATA in extracted spectra</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-776</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;Using /projects/HSC/PFS/Subaru/CALIB-SuNSS-bad to extract the spectra for 46241 r1 results in missing spectra from some rows of the detector, I think, certainly the same  index in the pfsArm.flux data.  E.g. 46241 r1 the mask for &lt;tt&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;1751, 1787, 1816, 1832, 1841, 1869, 1874, 1915, 2016&amp;#93;&lt;/span&gt;&lt;/tt&gt; are all set to 256 (NO_DATA).&lt;/p&gt;

&lt;p&gt;See  &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13410_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13410/13410_46241-r1-bad-extractions.png&quot; title=&quot;46241-r1-bad-extractions.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13410&quot; file-preview-title=&quot;46241-r1-bad-extractions.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13410/_thumb_13410.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;

&lt;p&gt;The data looks fine for that row, and there&apos;s nothing obviously wrong with the fiberTrace &amp;#8211; and I don&apos;t know how that could give problems for a particular pixel for every extracted spectrum.&lt;/p&gt;

&lt;p&gt;Using /projects/HSC/PFS/Subaru/CALIB-SuNSS I don&apos;t see the problem.  The CALIB-SuNSS-bad calibs are not good, they were made with only two 10s fibre trace exposures, but I think we need to know what went wrong.  I&apos;d also like to see a bit set for why extractions fail in addition to NO_DATA (which can mean other things too).&lt;/p&gt;</description>
                <environment></environment>
        <key id="15455">PIPE2D-776</key>
            <summary>Unexplained BAD_DATA in extracted spectra</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
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                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="rhl">rhl</reporter>
                        <labels>
                    </labels>
                <created>Fri, 12 Mar 2021 03:00:00 +0000</created>
                <updated>Wed, 17 Mar 2021 13:45:06 +0000</updated>
                            <resolved>Wed, 17 Mar 2021 13:45:06 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>3</watches>
                                                                <comments>
                            <comment id="18847" author="rhl" created="Fri, 12 Mar 2021 15:15:19 +0000"  >&lt;p&gt;Paul and I think that this must be a problem in the matrix inversion that handles overlapping traces.&lt;/p&gt;</comment>
                            <comment id="18876" author="price" created="Tue, 16 Mar 2021 21:37:36 +0000"  >&lt;p&gt;Added code to catch zeroes in the diagonal of the matrix, and mask them as &lt;tt&gt;BAD_FIBERTRACE&lt;/tt&gt;.&lt;/p&gt;</comment>
                            <comment id="18877" author="hassan" created="Tue, 16 Mar 2021 22:10:14 +0000"  >&lt;p&gt;Changes approved with no additional comments.&lt;/p&gt;</comment>
                            <comment id="18884" author="price" created="Wed, 17 Mar 2021 13:45:06 +0000"  >&lt;p&gt;Merged to master.&lt;/p&gt;</comment>
                    </comments>
                    <attachments>
                            <attachment id="13410" name="46241-r1-bad-extractions.png" size="355119" author="rhl" created="Fri, 12 Mar 2021 03:01:45 +0000"/>
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