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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-671] Analyze Subaru images and create a 2d PSF solution - same illumination at all values of defocus</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-671</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;Using post stamp images created in&#160;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-654&quot; title=&quot;Create post-stamp images for Subaru data taken in November/December 2020&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-654&quot;&gt;&lt;del&gt;PIPE2D-654&lt;/del&gt;&lt;/a&gt;, and psf estimation algorithm from &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-614&quot; title=&quot;Illumination estimate of the pupil should be constant across different defocuses for single spot&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-614&quot;&gt;&lt;del&gt;PIPE2D-614&lt;/del&gt;&lt;/a&gt; (with improvements from &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-670&quot; title=&quot;Improve modeling of pupil illumination; struts&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-670&quot;&gt;&lt;del&gt;PIPE2D-670&lt;/del&gt;&lt;/a&gt;), create solution for 2d psf, at any location on the detector plane.&lt;/p&gt;

&lt;p&gt;These results will be used for &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-490&quot; title=&quot;Evaluate the quality of the PSF fitting using the pipeline and decide future direction&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-490&quot;&gt;&lt;del&gt;PIPE2D-490&lt;/del&gt;&lt;/a&gt; and general evolution of the quality of the 2d PSF solutions.&lt;/p&gt;</description>
                <environment></environment>
        <key id="15079">PIPE2D-671</key>
            <summary>Analyze Subaru images and create a 2d PSF solution - same illumination at all values of defocus</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="ncaplar">ncaplar</assignee>
                                    <reporter username="ncaplar">ncaplar</reporter>
                        <labels>
                    </labels>
                <created>Mon, 7 Dec 2020 23:08:27 +0000</created>
                <updated>Fri, 28 Jan 2022 17:16:25 +0000</updated>
                            <resolved>Wed, 17 Mar 2021 21:17:40 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>1</watches>
                                                                <comments>
                            <comment id="18362" author="ncaplar" created="Tue, 19 Jan 2021 19:11:28 +0000"  >&lt;p&gt;Solutions are placed in&#160;`/tigress/ncaplar/&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-671&quot; title=&quot;Analyze Subaru images and create a 2d PSF solution - same illumination at all values of defocus&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-671&quot;&gt;&lt;del&gt;PIPE2D-671&lt;/del&gt;&lt;/a&gt;`. &#160;The description is the same as in&#160;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-450&quot; title=&quot;Create array_of_arrays that contains 2d PSF model inputs&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-450&quot;&gt;&lt;del&gt;PIPE2D-450&lt;/del&gt;&lt;/a&gt;&#160;and &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-521&quot; title=&quot;Create global PSF solutions for the July 2019, using 2020 improvments&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-521&quot;&gt;&lt;del&gt;PIPE2D-521&lt;/del&gt;&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;positions_of_simulation_00 array contains positions of each PSF model. The columns are: 1. fiberId, 2. approximate x coordinate, 3. approximate y coordinate, 4. wavelength.&lt;/p&gt;

&lt;p&gt;array_of_simulation_00 array contains arrays with 189x189 PSF models (9x times oversampled).&lt;/p&gt;

&lt;p&gt;At the moment there is *_Jan08_v2 versions available.&#160;&lt;/p&gt;</comment>
                            <comment id="18363" author="ncaplar" created="Tue, 19 Jan 2021 19:16:08 +0000"  >&lt;p&gt;Compilations of figures:&lt;/p&gt;

&lt;p&gt;1. Median_wavefront - showing summary of wavefront measurments&lt;br/&gt;
 2. quality_in_focus and quality_in_defocus - showing chi^2 after subtraction of model, as a function of variable chi2_max (chi^2 without any subtraction).&lt;/p&gt;

&lt;p&gt;3. p4_z5,p1_z5,0_z5,m1_z5,m4_z5&#160; - showing as an example how Z5 is changing as defocus&lt;br/&gt;
 4. example_2d and example_1d - showing an example of the model and subtraction in 2d and 1d for a single spot; showing two example with lower and higher flux&lt;/p&gt;

&lt;p&gt;There is an obvious problem in size of the psf at higher flux, visible as the ring around the psf solution. I will open a ticket to tackle this problem.&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;</comment>
                            <comment id="18404" author="ncaplar" created="Thu, 28 Jan 2021 21:42:52 +0000"  >&lt;p&gt;Observing Figure quality_in_focus once can observe how point of Argon at around log10(chi^2_max)=2.7 &amp;amp; log10(chi^2)=1 perform particularly poorly. I see that all of these points are from redest available Argon point, at 966.06 nm. It seems that there is some sort of continuum at these locations which is not accounted for when cutting the images.&lt;/p&gt;</comment>
                    </comments>
                <issuelinks>
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                                                                <inwardlinks description="is blocked by">
                                        <issuelink>
            <issuekey id="15290">PIPE2D-721</issuekey>
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                                            <outwardlinks description="relates to">
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            <issuekey id="15216">PIPE2D-696</issuekey>
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            <issuekey id="15226">PIPE2D-700</issuekey>
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                                                                <inwardlinks description="relates to">
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            <issuekey id="14601">PIPE2D-614</issuekey>
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            <issuelink>
            <issuekey id="15041">PIPE2D-654</issuekey>
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            <issuekey id="14134">PIPE2D-490</issuekey>
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            <issuekey id="15078">PIPE2D-670</issuekey>
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                <attachments>
                            <attachment id="13327" name="0 z5.png" size="128538" author="ncaplar" created="Tue, 19 Jan 2021 18:48:47 +0000"/>
                            <attachment id="13325" name="example_1d_low_flux.png" size="78303" author="ncaplar" created="Tue, 19 Jan 2021 18:38:03 +0000"/>
                            <attachment id="13333" name="example_1d_mid_flux.png" size="97395" author="ncaplar" created="Tue, 19 Jan 2021 19:18:23 +0000"/>
                            <attachment id="13326" name="example_2d_low_flux.png" size="70357" author="ncaplar" created="Tue, 19 Jan 2021 18:38:03 +0000"/>
                            <attachment id="13332" name="example_2d_mid_defocus.png" size="99335" author="ncaplar" created="Tue, 19 Jan 2021 19:18:22 +0000"/>
                            <attachment id="13334" name="example_2d_mid_flux.png" size="63353" author="ncaplar" created="Tue, 19 Jan 2021 19:18:40 +0000"/>
                            <attachment id="13328" name="m1 z5.png" size="127623" author="ncaplar" created="Tue, 19 Jan 2021 18:48:47 +0000"/>
                            <attachment id="13329" name="m4 z5.png" size="124758" author="ncaplar" created="Tue, 19 Jan 2021 18:48:47 +0000"/>
                            <attachment id="13322" name="median_wavefront.png" size="264765" author="ncaplar" created="Tue, 19 Jan 2021 18:31:46 +0000"/>
                            <attachment id="13330" name="p1 z5.png" size="128194" author="ncaplar" created="Tue, 19 Jan 2021 18:48:47 +0000"/>
                            <attachment id="13331" name="p4 z5.png" size="124208" author="ncaplar" created="Tue, 19 Jan 2021 18:48:47 +0000"/>
                            <attachment id="13323" name="quality_in_defocus.png" size="97140" author="ncaplar" created="Tue, 19 Jan 2021 18:32:26 +0000"/>
                            <attachment id="13324" name="quality_in_focus.png" size="99915" author="ncaplar" created="Tue, 19 Jan 2021 18:32:28 +0000"/>
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