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<channel>
    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
    </build-info>


<item>
            <title>[PIPE2D-616] Compute 2nd moments for Med Res data</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-616</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;With respect to determining the alignment for medium resolution exposures, as discussed today during the SpS hardware telecon, please compute using the 2D DRP second moments for the following medium-resolution HgAr visit sets:&#160;&#160;&lt;/p&gt;

&lt;p&gt;3443...3450&lt;br/&gt;
18052...18059&lt;/p&gt;

&lt;p&gt;and the following lines:&lt;/p&gt;

&lt;p&gt;696.7352, 727.494 , 795.0362, 912.5471, 966.0435&lt;/p&gt;

&lt;p&gt;Note that as the above data are based on the HgAr lamp, the continuum needs to be removed.&lt;/p&gt;

&lt;p&gt;These data would be used to compare with the plots generated by &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=fmadec&quot; class=&quot;user-hover&quot; rel=&quot;fmadec&quot;&gt;fmadec&lt;/a&gt; using the SEP python module (&lt;a href=&quot;https://sep.readthedocs.io/en/v1.0.x/&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;https://sep.readthedocs.io/en/v1.0.x/&lt;/a&gt;) in slide 12 of the following presentation: &lt;a href=&quot;https://sumire.pbworks.com/w/file/fetch/140734437/LAM_Subaru_SM1_20200715.pdf&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;https://sumire.pbworks.com/w/file/fetch/140734437/LAM_Subaru_SM1_20200715.pdf&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;So a similar set of plots should be generated for this ticket.&lt;/p&gt;</description>
                <environment></environment>
        <key id="14630">PIPE2D-616</key>
            <summary>Compute 2nd moments for Med Res data</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="hassan">hassan</assignee>
                                    <reporter username="hassan">hassan</reporter>
                        <labels>
                    </labels>
                <created>Wed, 15 Jul 2020 17:52:15 +0000</created>
                <updated>Mon, 4 Jan 2021 20:23:19 +0000</updated>
                            <resolved>Fri, 4 Sep 2020 21:44:33 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>5</watches>
                                                                <comments>
                            <comment id="17442" author="hassan" created="Wed, 15 Jul 2020 17:57:59 +0000"  >
&lt;p&gt;Please start with processing the post-migration visit_set (18052...18059) which should currently be available on tigress.&lt;/p&gt;</comment>
                            <comment id="17444" author="rhl" created="Wed, 15 Jul 2020 18:20:45 +0000"  >&lt;p&gt;We need to be quite careful here.  The background (including continuum) subtraction has to be done carefully, and a non-trivial moment calculation used (HSM would be my first choice)&lt;/p&gt;</comment>
                            <comment id="17445" author="price" created="Wed, 15 Jul 2020 18:23:35 +0000"  >&lt;p&gt;Is it not necessary to use SExtractor in order to compare apples-to-apples with the plots in the presentation?&lt;/p&gt;</comment>
                            <comment id="17529" author="price" created="Thu, 13 Aug 2020 16:08:28 +0000"  >&lt;p&gt;Please let me know if this is still desired, or if it is moot following the acquisition of new data.&lt;/p&gt;</comment>
                            <comment id="17536" author="hassan" created="Thu, 13 Aug 2020 19:03:49 +0000"  >&lt;p&gt;Yes, this is still desired. The data haven&apos;t yet been acquired from SM1. I&apos;m hoping by early next week.&lt;/p&gt;</comment>
                            <comment id="17560" author="cloomis" created="Wed, 19 Aug 2020 15:42:29 +0000"  >&lt;p&gt;Data taken. The command sequence was:&#160;&lt;/p&gt;
&lt;div class=&quot;preformatted panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;preformattedContent panelContent&quot;&gt;
&lt;pre&gt;start at low res
take 1xflat + 3xarc

for rep in 1..5:
     move to med res
     take 1xflat + 3xarc
 
     move to low res
     take 1xflat + 3xarc
 &lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;
&lt;p&gt;And the arcs are neon=50 argon=50 krypton=50&lt;/p&gt;

&lt;p&gt;The acquisition log is:&lt;/p&gt;
&lt;div class=&quot;preformatted panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;preformattedContent panelContent&quot;&gt;
&lt;pre&gt;set_id|sequence_type|name|start_date         |min_visit|max_visit|cmd_str                                                                         |
------|-------------|----|-------------------|---------|---------|--------------------------------------------------------------------------------|
  1348|flats        |    |2020-08-17 17:02:30|    23743|    23743|expose flat halogen=3 comments=test_gratingMotion_0                             |
  1349|arcs         |    |2020-08-17 17:03:34|    23744|    23746|expose arc neon=50 argon=50 krypton=50 duplicate=3 comments=test_gratingMotion_0|
  1350|flats        |    |2020-08-17 17:11:45|    23747|    23747|expose flat halogen=3 comments=test_gratingMotion_1                             |
  1351|arcs         |    |2020-08-17 17:12:49|    23748|    23750|expose arc neon=50 argon=50 krypton=50 duplicate=3 comments=test_gratingMotion_1|
  1352|flats        |    |2020-08-17 17:20:58|    23751|    23751|expose flat halogen=3 comments=test_gratingMotion_1                             |
  1353|arcs         |    |2020-08-17 17:22:03|    23752|    23754|expose arc neon=50 argon=50 krypton=50 duplicate=3 comments=test_gratingMotion_1|
  1354|flats        |    |2020-08-17 17:30:12|    23755|    23755|expose flat halogen=3 comments=test_gratingMotion_2                             |
  1355|arcs         |    |2020-08-17 17:31:17|    23756|    23758|expose arc neon=50 argon=50 krypton=50 duplicate=3 comments=test_gratingMotion_2|
  1356|flats        |    |2020-08-17 17:39:26|    23759|    23759|expose flat halogen=3 comments=test_gratingMotion_2                             |
  1357|arcs         |    |2020-08-17 17:40:30|    23760|    23762|expose arc neon=50 argon=50 krypton=50 duplicate=3 comments=test_gratingMotion_2|
  1358|flats        |    |2020-08-17 17:48:39|    23763|    23763|expose flat halogen=3 comments=test_gratingMotion_3                             |
  1359|arcs         |    |2020-08-17 17:49:43|    23764|    23766|expose arc neon=50 argon=50 krypton=50 duplicate=3 comments=test_gratingMotion_3|
  1360|flats        |    |2020-08-17 17:57:53|    23767|    23767|expose flat halogen=3 comments=test_gratingMotion_3                             |
  1361|arcs         |    |2020-08-17 17:58:57|    23768|    23770|expose arc neon=50 argon=50 krypton=50 duplicate=3 comments=test_gratingMotion_3|
  1362|flats        |    |2020-08-17 18:07:06|    23771|    23771|expose flat halogen=3 comments=test_gratingMotion_4                             |
  1363|arcs         |    |2020-08-17 18:08:11|    23772|    23774|expose arc neon=50 argon=50 krypton=50 duplicate=3 comments=test_gratingMotion_4|
  1364|flats        |    |2020-08-17 18:16:19|    23775|    23775|expose flat halogen=3 comments=test_gratingMotion_4                             |
  1365|arcs         |    |2020-08-17 18:17:23|    23776|    23778|expose arc neon=50 argon=50 krypton=50 duplicate=3 comments=test_gratingMotion_4|
  1366|flats        |    |2020-08-17 18:25:33|    23779|    23779|expose flat halogen=3 comments=test_gratingMotion_5                             |
  1367|arcs         |    |2020-08-17 18:26:37|    23780|    23782|expose arc neon=50 argon=50 krypton=50 duplicate=3 comments=test_gratingMotion_5|
  1368|flats        |    |2020-08-17 18:34:49|    23783|    23783|expose flat halogen=3 comments=test_gratingMotion_5                             |
  1369|arcs         |    |2020-08-17 18:35:53|    23784|    23786|expose arc neon=50 argon=50 krypton=50 duplicate=3 comments=test_gratingMotion_5|
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;</comment>
                            <comment id="17565" author="price" created="Thu, 20 Aug 2020 21:25:32 +0000"  >&lt;p&gt;The measurements are on the tiger cluster in &lt;tt&gt;/tigress/pprice/pipe2d-616&lt;/tt&gt;, in the same format as used for measurements by the LSST pipeline (FITS tables, first HDU is of the most interest).&lt;/p&gt;</comment>
                            <comment id="17566" author="price" created="Thu, 20 Aug 2020 21:27:25 +0000"  >&lt;p&gt;The below plot shows the measured shape of all lines as a function of x,y on the detector. The user will probably want to threshold the list of lines by the flux, multiple measures of which are in the catalogs.&lt;/p&gt;

&lt;p&gt;&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/12837/12837_shape.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/span&gt;&lt;/p&gt;</comment>
                            <comment id="17567" author="price" created="Thu, 20 Aug 2020 21:28:52 +0000"  >&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
sqlite&amp;gt; SELECT visit, GROUP_CONCAT(arm), pfsDesignId, field, lamps, exptime, attenuator, dither, shift, focus FROM raw WHERE visit BETWEEN 23743 AND 23782 GROUP
 BY visit;
23743|r,b|1099528409104|FLAT|Quartz|3.0|-9998.0|0.0|0.0|-0.0003
23744|r,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23745|r,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23746|r,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23747|b,m|1099528409104|FLAT|Quartz|3.0|-9998.0|0.0|0.0|-0.0003
23748|m,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23749|m,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23750|b,m|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23751|b,r|1099528409104|FLAT|Quartz|3.0|-9998.0|0.0|0.0|-0.0003
23752|b,r|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23753|b,r|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23754|b,r|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23755|m,b|1099528409104|FLAT|Quartz|3.0|-9998.0|0.0|0.0|-0.0003
23756|m,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23757|m,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23758|m,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23759|b,r|1099528409104|FLAT|Quartz|3.0|-9998.0|0.0|0.0|-0.0003
23760|b,r|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23761|b,r|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23762|b,r|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23763|b,m|1099528409104|FLAT|Quartz|3.0|-9998.0|0.0|0.0|-0.0003
23764|m,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23765|m,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23766|m,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23767|b,r|1099528409104|FLAT|Quartz|3.0|-9998.0|0.0|0.0|-0.0003
23768|r,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23769|r,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23770|r,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23771|m,b|1099528409104|FLAT|Quartz|3.0|-9998.0|0.0|0.0|-0.0003
23772|b,m|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23773|m,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23774|b,m|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23775|b,r|1099528409104|FLAT|Quartz|3.0|-9998.0|0.0|0.0|-0.0003
23776|b,r|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23777|b,r|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23778|r,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23779|m,b|1099528409104|FLAT|Quartz|3.0|-9998.0|0.0|0.0|-0.0003
23780|m,b|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23781|b,m|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003
23782|b,m|1099528409104|COMPARISON|Ar,Kr,Ne|50.0|-9998.0|0.0|0.0|-0.0003

(lsst-scipipe) pprice@tiger2-sumire:/projects/HSC/PFS/Subaru $ ingestPfsImages.py /projects/HSC/PFS/Subaru --pfsConfigDir /projects/HSC/PFS/Subaru/drp/pfsDesign --config parse.pfsDesignId=1099528409104 --ignore-ingested -- &lt;span class=&quot;code-quote&quot;&gt;&apos;/projects/HSC/PFS/Subaru/raw/2020-08-*/sps/PFSA*.fits&apos;&lt;/span&gt;

The last r/m biases were 6 weeks ago (2020-06-30), probably taken as part of the stability test (PIPE2D-618). Will push forward assuming those are good enough.

Steps:
1. Bootstrap a valid detectorMap.
2. Generate fiberTrace.
3. &lt;span class=&quot;code-object&quot;&gt;Process&lt;/span&gt; the arc to get a really good detectorMap.
4. Use custom script to run LSST measurement framework on arc lines.

(lsst-scipipe) pprice@tiger2-sumire:/tigress/pprice/pipe2d-616 $ ingestPfsCalibs.py /projects/HSC/PFS/Subaru --output=/projects/HSC/PFS/Subaru/CALIB-price --validity=1800 --doraise --mode=copy ~/pfs/drp_pfs_data/detectorMap/detectorMap-2020Apr-m1.fits
(lsst-scipipe) pprice@tiger2-sumire:/tigress/pprice/pipe2d-616 $ bootstrapDetectorMap.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/bootstrap --doraise --flatId visit=23747 arm=m --arcId visit=23748 arm=m

bootstrap INFO: Median difference from detectorMap: -1.268960,0.469803 pixels
bootstrap INFO: Fit 277/336 points, rms: x=0.722616 y=2.441186 total=2.069997 pixels
bootstrap INFO: Updating detectorMap...
bootstrap INFO: Median difference from detectorMap: 0.698470,0.597844 pixels
bootstrap INFO: Fit 191/229 points, rms: x=0.345339 y=2.602193 total=2.158558 pixels

(lsst-scipipe) pprice@tiger2-sumire:/tigress/pprice/pipe2d-616 $ ingestPfsCalibs.py /projects/HSC/PFS/Subaru --output=/projects/HSC/PFS/Subaru/CALIB-price --validity=1800 --doraise --mode=copy /projects/HSC/PFS/Subaru/rerun/price/pipe2d-616/bootstrap/DETECTORMAP/pfsDetectorMap-023748-m1.fits 

(lsst-scipipe) pprice@tiger2-sumire:/tigress/pprice/pipe2d-616 $ constructFiberTrace.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/fiberTrace --doraise --batch-type=smp --cores=1 --id visit=23747
(lsst-scipipe) pprice@tiger2-sumire:/tigress/pprice/pipe2d-616 $ ingestPfsCalibs.py /projects/HSC/PFS/Subaru --output=/projects/HSC/PFS/Subaru/CALIB-price --validity=1800 --doraise --mode=copy /projects/HSC/PFS/Subaru/rerun/price/pipe2d-616/fiberTrace/FIBERTRACE/pfsFiberTrace-2020-08-17-023747-m1.fits 

(lsst-scipipe) pprice@tiger2-sumire:/tigress/pprice/pipe2d-616 $ reduceArc.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/arc --id visit=23748 arm=m

reduceArc.fitDetectorMap INFO: Final fit: chi2=1121.654719 xRMS=0.154362 yRMS=1.054392 (0.049562 nm, 18.599770 km/s) from 445/473 lines
reduceArc.fitDetectorMap INFO: Fit quality from reserved lines: chi2=258.705408 xRMS=0.185894 yRMS=0.881486 (0.041434 nm, 15.549659 km/s) from 48 lines (9.1%)
reduceArc.fitDetectorMap INFO: Softening errors by 0.115597 pixels (0.005434 nm, 2.039167 km/s) to yield chi^2/dof=1
reduceArc.fitDetectorMap INFO: Softened fit: chi2=929.695791 xRMS=0.092336 yRMS=0.802256 (0.037601 nm, 14.109900 km/s) from 445/526 lines
reduceArc.fitDetectorMap INFO: Softened fit quality from reserved lines: chi2=105.743892 xRMS=0.108362 yRMS=0.697862 (0.032708 nm, 12.273840 km/s) from 48 lines (9.1%)

Having difficulty getting good wavelength fits to the m arm with the &lt;span class=&quot;code-keyword&quot;&gt;new&lt;/span&gt; GlobalDetectorMap (tickets/PIPE2D-358; getting systematic wavelength residuals), so revert to the current version; will work on fitting m later.

reduceArc.calibrateWavelengths INFO: FiberId 2, rms 0.003757 nm (0.081 pix) from 54/62 (0.002162 nm = 0.047 pix &lt;span class=&quot;code-keyword&quot;&gt;for&lt;/span&gt; 10 reserved points), 714.90-885.63 nm
reduceArc.calibrateWavelengths INFO: Fiber 2: wavelength correction -0.015799 +/- 0.010838 nm
reduceArc.calibrateWavelengths INFO: FiberId 63, rms 0.002983 nm (0.064 pix) from 53/63 (0.001688 nm = 0.036 pix &lt;span class=&quot;code-keyword&quot;&gt;for&lt;/span&gt; 10 reserved points), 717.59-885.63 nm
reduceArc.calibrateWavelengths INFO: Fiber 63: wavelength correction -0.018139 +/- 0.024752 nm
reduceArc.calibrateWavelengths INFO: FiberId 192, rms 0.003791 nm (0.082 pix) from 48/57 (0.004014 nm = 0.087 pix &lt;span class=&quot;code-keyword&quot;&gt;for&lt;/span&gt; 10 reserved points), 714.90-885.63 nm
reduceArc.calibrateWavelengths INFO: Fiber 192: wavelength correction -0.017744 +/- 0.044794 nm
reduceArc.calibrateWavelengths INFO: FiberId 255, rms 0.002789 nm (0.060 pix) from 50/63 (0.002168 nm = 0.047 pix &lt;span class=&quot;code-keyword&quot;&gt;for&lt;/span&gt; 10 reserved points), 714.90-885.63 nm
reduceArc.calibrateWavelengths INFO: Fiber 255: wavelength correction -0.016435 +/- 0.028260 nm
reduceArc.calibrateWavelengths INFO: FiberId 339, rms 0.002716 nm (0.058 pix) from 49/61 (0.003449 nm = 0.074 pix &lt;span class=&quot;code-keyword&quot;&gt;for&lt;/span&gt; 10 reserved points), 714.90-885.63 nm
reduceArc.calibrateWavelengths INFO: Fiber 339: wavelength correction -0.017634 +/- 0.021243 nm
reduceArc.calibrateWavelengths INFO: FiberId 401, rms 0.003812 nm (0.082 pix) from 50/63 (0.002040 nm = 0.044 pix &lt;span class=&quot;code-keyword&quot;&gt;for&lt;/span&gt; 10 reserved points), 714.90-885.63 nm
reduceArc.calibrateWavelengths INFO: Fiber 401: wavelength correction -0.011027 +/- 0.027518 nm
reduceArc.calibrateWavelengths INFO: FiberId 464, rms 0.004156 nm (0.090 pix) from 56/60 (0.004277 nm = 0.092 pix &lt;span class=&quot;code-keyword&quot;&gt;for&lt;/span&gt; 10 reserved points), 714.90-885.63 nm
reduceArc.calibrateWavelengths INFO: Fiber 464: wavelength correction -0.010072 +/- 0.030665 nm
reduceArc.calibrateWavelengths INFO: FiberId 525, rms 0.004800 nm (0.103 pix) from 46/55 (0.005414 nm = 0.117 pix &lt;span class=&quot;code-keyword&quot;&gt;for&lt;/span&gt; 10 reserved points), 714.90-885.63 nm
reduceArc.calibrateWavelengths INFO: Fiber 525: wavelength correction -0.015462 +/- 0.032322 nm
reduceArc.calibrateWavelengths INFO: FiberId 587, rms 0.003302 nm (0.071 pix) from 48/57 (0.003198 nm = 0.069 pix &lt;span class=&quot;code-keyword&quot;&gt;for&lt;/span&gt; 10 reserved points), 714.90-885.63 nm
reduceArc.calibrateWavelengths INFO: Fiber 587: wavelength correction -0.010947 +/- 0.030819 nm
reduceArc.calibrateWavelengths INFO: FiberId 650, rms 0.003758 nm (0.081 pix) from 49/60 (0.004431 nm = 0.096 pix &lt;span class=&quot;code-keyword&quot;&gt;for&lt;/span&gt; 10 reserved points), 714.90-885.63 nm
reduceArc.calibrateWavelengths INFO: Fiber 650: wavelength correction -0.020529 +/- 0.026221 nm


(lsst-scipipe) pprice@tiger2-sumire:/tigress/pprice/pipe2d-616 $ constructFiberTrace.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/fiberTrace --doraise --batch-type=smp --cores=1 --id visit=23743 arm=r
(lsst-scipipe) pprice@tiger2-sumire:/tigress/pprice/pipe2d-616 $ ingestPfsCalibs.py /projects/HSC/PFS/Subaru --output=/projects/HSC/PFS/Subaru/CALIB-price --validity=1800 --doraise --mode=copy /projects/HSC/PFS/Subaru/rerun/price/pipe2d-616/fiberTrace/FIBERTRACE/pfsFiberTrace-2020-08-17-023743-r1.fits 

(lsst-scipipe) pprice@tiger2-sumire:/tigress/pprice/pipe2d-616 $ reduceArc.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/arc --id visit=23744 arm=r

reduceArc.calibrateWavelengths INFO: FiberId 339, rms 0.007783 nm (0.090 pix) from 80/94 (0.005586 nm = 0.065 pix &lt;span class=&quot;code-keyword&quot;&gt;for&lt;/span&gt; 10 reserved points), 640.40-955.00 nm
reduceArc.calibrateWavelengths INFO: Fiber 339: wavelength correction 0.045030 +/- 0.006753 nm


reduceArc.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/arc --id visit=23744..23746 arm=r -j 3 -c reduceExposure.doWriteCalexp=True
reduceArc.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/arc --id visit=23748..23750 arm=m -j 3 -c reduceExposure.doWriteCalexp=True
reduceArc.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/arc --id visit=23752..23754 arm=r -j 3 -c reduceExposure.doWriteCalexp=True
reduceArc.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/arc --id visit=23756..23758 arm=m -j 3 -c reduceExposure.doWriteCalexp=True
reduceArc.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/arc --id visit=23760..23762 arm=r -j 3 -c reduceExposure.doWriteCalexp=True
reduceArc.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/arc --id visit=23764..23766 arm=m -j 3 -c reduceExposure.doWriteCalexp=True
reduceArc.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/arc --id visit=23768..23770 arm=r -j 3 -c reduceExposure.doWriteCalexp=True
reduceArc.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/arc --id visit=23772..23774 arm=m -j 3 -c reduceExposure.doWriteCalexp=True
reduceArc.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/arc --id visit=23776..23778 arm=r -j 3 -c reduceExposure.doWriteCalexp=True
reduceArc.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB-price --rerun=price/pipe2d-616/arc --id visit=23780..23782 arm=m -j 3 -c reduceExposure.doWriteCalexp=True

(lsst-scipipe) pprice@tiger2-sumire:/tigress/pprice/pipe2d-616 $ python pipe2d-616.py /projects/HSC/PFS/Subaru --calib /projects/HSC/PFS/Subaru/CALIB-price --rerun price/pipe2d-616/arc --id visit=23744..23746^23748..23750^23752..23754^23756..23758^23760..23762^23764..23766^23768..23770^23772..23774^23776..23778^23780..23782 arm=r^m -j 20
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;</comment>
                            <comment id="17568" author="price" created="Thu, 20 Aug 2020 21:49:01 +0000"  >&lt;p&gt;Added &lt;tt&gt;ext&amp;#95;simpleShape&amp;#95;SimpleShape&lt;/tt&gt;, &lt;tt&gt;ext&amp;#95;shapeHSM&amp;#95;HsmSourceMoments&lt;/tt&gt;, and &lt;tt&gt;ext&amp;#95;shapeHSM&amp;#95;HsmSourceMomentsRound&lt;/tt&gt; measurements at &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=rhl&quot; class=&quot;user-hover&quot; rel=&quot;rhl&quot;&gt;rhl&lt;/a&gt;&apos;s request.&lt;/p&gt;</comment>
                            <comment id="17577" author="price" created="Fri, 21 Aug 2020 19:42:01 +0000"  >&lt;p&gt;This provides a clean sample:&lt;/p&gt;

&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
&amp;gt;&amp;gt;&amp;gt; gaussMag = -2.5*np.log10(catalog[&lt;span class=&quot;code-quote&quot;&gt;&quot;base_GaussianFlux_instFlux&quot;&lt;/span&gt;])
&amp;gt;&amp;gt;&amp;gt; psfMag = -2.5*np.log10(catalog[&lt;span class=&quot;code-quote&quot;&gt;&quot;base_PsfFlux_instFlux&quot;&lt;/span&gt;])
&amp;gt;&amp;gt;&amp;gt; saturated = catalog[&lt;span class=&quot;code-quote&quot;&gt;&quot;base_PixelFlags_flag_saturatedCenter&quot;&lt;/span&gt;]
&amp;gt;&amp;gt;&amp;gt; select = (psfMag &amp;lt; -9) &amp;amp; (psfMag &amp;gt; -14) &amp;amp; ~saturated &amp;amp; (gaussMag - psfMag &amp;gt; -0.55)
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;

&lt;p&gt;I&apos;m a bit concerned that this removes low-wavelength low-&lt;tt&gt;fiberId&lt;/tt&gt; lines (bottom right-hand corner). Decreasing the &lt;tt&gt;gaussMag - psfMag&lt;/tt&gt; limit gets them back, at the cost of admitting some contamination.&lt;/p&gt;</comment>
                            <comment id="17578" author="price" created="Fri, 21 Aug 2020 22:02:35 +0000"  >&lt;p&gt;I&apos;ve added a &lt;tt&gt;numNear&lt;/tt&gt; column, which is the number of lines within 0.4 nm. I now like the selection:&lt;/p&gt;
&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
&amp;gt;&amp;gt;&amp;gt; select = (psfMag &amp;lt; -9) &amp;amp; (psfMag &amp;gt; -14) &amp;amp; ~saturated &amp;amp; (catalog[&lt;span class=&quot;code-quote&quot;&gt;&quot;numNear&quot;&lt;/span&gt;] == 0)
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;</comment>
                            <comment id="17622" author="hassan" created="Fri, 4 Sep 2020 21:44:33 +0000"  >&lt;p&gt;Work presented to Fabrice last week. Further work necessary, but need more discussion with Fabrice, and new tickets will be filed.&lt;/p&gt;</comment>
                    </comments>
                    <attachments>
                            <attachment id="12841" name="PFS PIPE2D-616.pdf" size="105126" author="price" created="Mon, 24 Aug 2020 21:51:14 +0000"/>
                            <attachment id="12840" name="pipe2d-616.py" size="6413" author="price" created="Fri, 21 Aug 2020 22:00:10 +0000"/>
                            <attachment id="12837" name="shape.png" size="28054" author="price" created="Thu, 20 Aug 2020 21:26:03 +0000"/>
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