https://pfspipe.ipmu.jp/jira This file is an XML representation of an issue en-us 8.3.4 803005 13-09-2019 https://pfspipe.ipmu.jp/jira/browse/PIPE2D-612 DRP 2-D Pipeline <p>got an error after doing a fresh install (<tt>./install_pfs.sh -t current /software/drp</tt>)</p> <div class="code panel" style="border-width: 1px;"><div class="codeContent panelContent"> <pre class="code-java"> Failed test output: Global pytest output is in /software/drp/pfs/drp_stella/tests/.tests/pytest-drp_stella.xml.failed The following tests failed: /software/drp/pfs/drp_stella/tests/.tests/pytest-drp_stella.xml.failed 1 tests failed scons: *** [checkTestStatus] Error 1 scons: building terminated because of errors. </pre> </div></div> PIPE2D-612

drp install failed (test failed)

Bug Normal Won't Fix Won't Fix price fmadec Wed, 24 Jun 2020 09:01:08 +0000 Mon, 4 Jan 2021 20:23:19 +0000 Fri, 26 Jun 2020 14:10:12 +0000 0 3 <p>Do you have <tt>git lfs</tt> installed and available?</p> <p>yes :</p> <p> </p> <p> </p> <div class="preformatted panel" style="border-width: 1px;"><div class="preformattedContent panelContent"> <pre> git version 2.18.2 git-lfs/2.4.1 (GitHub; linux amd64; go 1.9.4)  Package rh-git218-git-lfs-2.4.1-3.el7.x86_64 already installed and latest version </pre> </div></div> <p> </p> <p> </p> <p> </p> <p>restarted the same command today:</p> <p>and it seems that the first failure is :</p> <p> </p> <p> </p> <p> </p> <div class="code panel" style="border-width: 1px;"><div class="codeContent panelContent"> <pre class="code-java"> ================================================ FAILURES ================================================ _______________________________________ NevenPsfTestCase.testBasic _______________________________________ self = &lt;test_NevenPsf.NevenPsfTestCase testMethod=testBasic&gt; def setUp(self): drpPfsData = getPackageDir(<span class="code-quote">"drp_pfs_data"</span>) detMapFilename = os.path.join(drpPfsData, <span class="code-quote">"detectorMap"</span>, <span class="code-quote">"detectorMap-2019Apr-r1.fits"</span>) &gt; self.detMap = pfs.drp.stella.DetectorMap.readFits(detMapFilename) tests/test_NevenPsf.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/pfs/drp/stella/detectorMapContinued.py:113: in readFits with astropy.io.fits.open(pathName) as fits: </pre> </div></div> <p> </p> <p>the script is supposed to git clone (or whatever) everything it needs to performa the install and the test, right ?</p> <p>where those files supposed to be stored ?</p> <p> </p> <p> </p> <p> </p> <p>That file is <tt>$DRP_PFS_DATA_DIR/detectorMap/detectorMap-2019Apr-r1.fits</tt>. What are its contents? I suspect it's not a FITS file, or it's corrupt. Can you open it with <tt>fv</tt> or similar?</p> <p>As expected they are not fits file.</p> <p>but the question is why ? =&gt; git-lfs : yes but why ?</p> <p> </p> <p>I suggest you try an install from scratch (with a fresh OS install !)</p> <p>The machine on which I try to install drp is a centos:</p> <div class="preformatted panel" style="border-width: 1px;"><div class="preformattedContent panelContent"> <pre>CentOS Linux release 7.8.2003 (Core)</pre> </div></div> <p>git package installed:</p> <p> </p> <div class="preformatted panel" style="border-width: 1px;"><div class="preformattedContent panelContent"> <pre>yum list installed|grep git crontabs.noarch 1.11-6.20121102git.el7 @anaconda git.x86_64 1.8.3.1-23.el7_8 @updates git-lfs.x86_64 2.10.0-1.el7 @epel libglvnd.x86_64 1:1.0.1-0.8.git5baa1e5.el7 @base libglvnd-egl.x86_64 1:1.0.1-0.8.git5baa1e5.el7 @base libglvnd-glx.x86_64 1:1.0.1-0.8.git5baa1e5.el7 @base linux-firmware.noarch 20191203-76.gite8a0f4c.el7 @base rh-git218.x86_64 3.2-1.el7 @centos-sclo-rh rh-git218-git.x86_64 2.18.2-1.el7 @centos-sclo-rh rh-git218-git-core.x86_64 2.18.2-1.el7 @centos-sclo-rh rh-git218-git-core-doc.noarch 2.18.2-1.el7 @centos-sclo-rh rh-git218-git-lfs.x86_64 2.4.1-3.el7 @centos-sclo-rh rh-git218-perl-Git.noarch 2.18.2-1.el7 @centos-sclo-rh rh-git218-runtime.x86_64 3.2-1.el7 @centos-sclo-rh screen.x86_64 4.1.0-0.25.20120314git3c2946.el7 </pre> </div></div> <p> </p> <p> </p> <p>I have in the .bash_profile:</p> <div class="preformatted panel" style="border-width: 1px;"><div class="preformattedContent panelContent"> <pre>source scl_source enable devtoolset-8 rh-git218</pre> </div></div> <p> </p> <p>So I don't understand why it is not working properly</p> <p> </p> <p> </p> <p>Did you run <tt>git lfs install</tt> as the final step of the git lfs installation?</p> <p><a href="https://github.com/Subaru-PFS/drp_doc/blob/master/pipelineUser/installation.rst" class="external-link" rel="nofollow">https://github.com/Subaru-PFS/drp_doc/blob/master/pipelineUser/installation.rst</a></p> <p>Thanks Hassan!</p> <p>it was that! <br/> I missed that step in the install</p> <p>it works now</p> <p>Problem understood and no update is required in the 2D DRP software.</p> Development Rank 0|02qps2:ii Sprint 2DDRP-2021 A