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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-584] Dithered images are not properly dithered</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-584</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;When looking at creating dithered images (&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-581&quot; title=&quot;Create the postage stamps for the dithered LAM and Subaru data&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-581&quot;&gt;PIPE2D-581&lt;/a&gt;) I noticed that dithered images are looking suspicious. &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=arnaud.lefur&quot; class=&quot;user-hover&quot; rel=&quot;arnaud.lefur&quot;&gt;arnaud.lefur&lt;/a&gt;&#160;and I did some investigative work, presented in the following figures:&lt;/p&gt;

&lt;p&gt;1) Dithering_May14.png - shows by how much the center of flux changes between images after dithering. I created results for the sequence of only 4 dithers (4440-4463) and the sequence of 9 dithers (4720-4773), taken at Subaru. Also added is the data from the last LAM dithered acquisition (4 dither positions, 21256-21279). I conclude 3 things:&lt;/p&gt;

&lt;p&gt;a) Subaru and LAM results are different&#160;&lt;/p&gt;

&lt;p&gt;b) final LAM dataset is also not perfect - at some point in the past the values for dithering were deduced by &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=arnaud.lefur&quot; class=&quot;user-hover&quot; rel=&quot;arnaud.lefur&quot;&gt;arnaud.lefur&lt;/a&gt;&#160;so that dithering was ``perfect&apos;&apos;.&#160;&lt;/p&gt;

&lt;p&gt;c) there is also potentially the difference between the results when depending on the sequence of moves (the difference between yellow and black data), but this would have to be further investigated in order to make a certain claim.&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;I am also attaching Figure&#160;Dithering_May13_Arnaud, which shows the analysis did by Arnaud which mimicking the black points from the previous plot. The results are consistent.&lt;/p&gt;

&lt;p&gt;Finally, I am also attaching Figure&#160;Dithering_pixels_added_simulation.png, which was the original Figure showing this effect that was discussed on Slack.&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;</description>
                <environment></environment>
        <key id="14397">PIPE2D-584</key>
            <summary>Dithered images are not properly dithered</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10100" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="No further work should be done on this.">Won&apos;t Fix</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="2">Won&apos;t Fix</resolution>
                                        <assignee username="ncaplar">ncaplar</assignee>
                                    <reporter username="ncaplar">ncaplar</reporter>
                        <labels>
                    </labels>
                <created>Thu, 14 May 2020 17:13:29 +0000</created>
                <updated>Fri, 28 Jan 2022 17:16:22 +0000</updated>
                            <resolved>Tue, 12 Jan 2021 19:36:50 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>3</watches>
                                                                <comments>
                            <comment id="17173" author="ncaplar" created="Tue, 19 May 2020 19:51:28 +0000"  >&lt;p&gt;I have added some further images. Dithering_May19 shows a complete list of all dithering images that we ever took at LAM or Subaru. The points show the median difference after a dithering movement, deduced from many HgAr spots across the detector. The error bars show the 16%-84% quantile of the results.&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;Single_example.png shows the example of the same spot in the July LAM data and Subaru data. The title above the figure shows the centroid of the 20x20 image. I am showing only the center 10x10 pixels so that the images are clearer. You can clearly see the difference between dithered images, even though the movement of the slit is nominally the same for two locations.&#160;&lt;/p&gt;</comment>
                            <comment id="17341" author="ncaplar" created="Wed, 17 Jun 2020 15:14:28 +0000"  >&lt;p&gt;On June 18, Fabrice and I plan to take some additional data to characterize the problem in blue (as red shutter does not function at the moment).&lt;/p&gt;</comment>
                            <comment id="17342" author="arnaud.lefur" created="Wed, 17 Jun 2020 15:59:37 +0000"  >&lt;p&gt;Did you already checked visit_set(368): ditheredArcs, PU dataset, 17998, 18051&lt;br/&gt;
I took those for software validation purposes.&lt;/p&gt;</comment>
                            <comment id="17344" author="ncaplar" created="Wed, 17 Jun 2020 18:51:04 +0000"  >&lt;p&gt;No, I did not! What kind of dithering did you do (9 positions, 4 positions?). I think that Fabrice and I are thinking of taking datasets which would be different than until now to better understand the problems. At least on my mind, it will be dithered by 1/3 and extending dithering by more steps, i.e., further than 0.5 pixels.&lt;/p&gt;</comment>
                            <comment id="17345" author="arnaud.lefur" created="Wed, 17 Jun 2020 18:58:06 +0000"  >&lt;p&gt;There are 9 positions.&lt;br/&gt;
sure, I get it. In any case, if you want to check it out, it&apos;s there.&lt;/p&gt;</comment>
                            <comment id="17543" author="ncaplar" created="Fri, 14 Aug 2020 04:45:50 +0000"  >&lt;p&gt;Added results from the first semi-successful run on Subaru in August. As I have written in slack: ``I definitely see that the movements are not the same in both directions, but it did&#160;&lt;em&gt;not&lt;/em&gt;&#160;reproduce the suspicious large difference in one direction, as sometimes seen before.&apos;&apos;&lt;/p&gt;</comment>
                            <comment id="17551" author="ncaplar" created="Mon, 17 Aug 2020 23:10:47 +0000"  >&lt;p&gt;I have added an updated version of Aug 14 experiment, with all of the positions available. The main conclusions are unchanged from the preliminary version. I have improved my centroid estimation which lowered the uncertainties of measurements. In the estimates of 1d uncertainties on the right-hand side of the Figure, the uncertainties do not include uncertainty on the estimation of the position at 0,0,0 position, i.e., 0,0,0 position is assumed to be known with infinite precision.&#160;&lt;/p&gt;</comment>
                            <comment id="18337" author="ncaplar" created="Tue, 12 Jan 2021 19:36:43 +0000"  >&lt;p&gt;This issue has been moved into the domain of instrument tickets (e.g., &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/INSTRM-1051&quot; title=&quot;Ensure that hexapod moves always move _up_ to final position.&quot; class=&quot;issue-link&quot; data-issue-key=&quot;INSTRM-1051&quot;&gt;&lt;del&gt;INSTRM-1051&lt;/del&gt;&lt;/a&gt; and following tickets).&lt;/p&gt;</comment>
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                <attachments>
                            <attachment id="12826" name="Dithering_Aug_14.png" size="92030" author="ncaplar" created="Fri, 14 Aug 2020 04:38:05 +0000"/>
                            <attachment id="12831" name="Dithering_Aug_14_Updated.png" size="99331" author="ncaplar" created="Mon, 17 Aug 2020 23:03:49 +0000"/>
                            <attachment id="12685" name="Dithering_May13_Arnaud.png" size="19176" author="ncaplar" created="Thu, 14 May 2020 17:12:01 +0000"/>
                            <attachment id="12686" name="Dithering_May14.png" size="66681" author="ncaplar" created="Thu, 14 May 2020 17:04:51 +0000"/>
                            <attachment id="12689" name="Dithering_May19.png" size="66072" author="ncaplar" created="Tue, 19 May 2020 19:38:42 +0000"/>
                            <attachment id="12690" name="Dithering_May20.png" size="74641" author="ncaplar" created="Wed, 20 May 2020 14:06:09 +0000"/>
                            <attachment id="12684" name="Dithering_pixels_added_simulation.png" size="56010" author="ncaplar" created="Thu, 14 May 2020 17:13:05 +0000"/>
                            <attachment id="12688" name="Single_example.png" size="28753" author="ncaplar" created="Tue, 19 May 2020 19:38:37 +0000"/>
                            <attachment id="12703" name="SM1_dither03_20200424_Exp225.png" size="12946" author="ncaplar" created="Thu, 18 Jun 2020 13:36:42 +0000"/>
                            <attachment id="12702" name="SM1_dither03_20200424_Exp225.png" size="12946" author="ncaplar" created="Thu, 18 Jun 2020 13:35:17 +0000"/>
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