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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-522] reduceArc raises numpy runtime warnings</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-522</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;When running &lt;tt&gt;reduceArc.py&lt;/tt&gt;, occasionally warning such as the following are raised:&lt;/p&gt;

&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
reduceArc.identifyLines INFO: Matched 58 from 78 observed and 74 reference lines
/tigress/HSC/PFS/stack/current/python/miniconda3-4.5.12/envs/lsst-scipipe/lib/python3.7/site-packages/numpy/core/fromnumeric.py:3118: RuntimeWarning: Mean of empty slice.
  out=out, **kwargs)
/tigress/HSC/PFS/stack/current/python/miniconda3-4.5.12/envs/lsst-scipipe/lib/python3.7/site-packages/numpy/core/_methods.py:85: RuntimeWarning: invalid value encountered in double_scalars
  ret = ret.dtype.type(ret / rcount)
/tigress/HSC/PFS/stack/current/python/miniconda3-4.5.12/envs/lsst-scipipe/lib/python3.7/site-packages/numpy/core/_methods.py:85: RuntimeWarning: invalid value encountered in true_divide
  ret = ret.dtype.type(ret / rcount)
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;

&lt;p&gt;Following discussions with &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=price&quot; class=&quot;user-hover&quot; rel=&quot;price&quot;&gt;price&lt;/a&gt; these can be safely ignored, but should be suppressed.&lt;/p&gt;

&lt;p&gt;These warnings were generated by the following command:&lt;/p&gt;

&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
reduceArc.py repo-01 --calib repo-01/CALIB --rerun calib0/arc --id visit=17244..17297 arm=r -j 20
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;

&lt;p&gt;using LAM data.&lt;/p&gt;</description>
                <environment></environment>
        <key id="14247">PIPE2D-522</key>
            <summary>reduceArc raises numpy runtime warnings</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="hassan">hassan</reporter>
                        <labels>
                    </labels>
                <created>Fri, 13 Mar 2020 21:44:21 +0000</created>
                <updated>Mon, 4 Jan 2021 20:23:13 +0000</updated>
                            <resolved>Tue, 24 Mar 2020 18:52:42 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>1</watches>
                                                                <comments>
                            <comment id="16926" author="price" created="Mon, 23 Mar 2020 20:22:40 +0000"  >&lt;p&gt;Fix was pretty simple. The key was identifying the warning, with:&lt;/p&gt;
&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
(lsst-scipipe) pprice@tiger2-sumire:/scratch/pprice/pipe2d-482 $ python -W error::RuntimeWarning -m pdb $(which reduceArc.py) DATA --calib DATA/CALIB --rerun pipe2d-522 --id visit=17244..17297 arm=r  --doraise
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;</comment>
                            <comment id="16939" author="price" created="Tue, 24 Mar 2020 18:52:42 +0000"  >&lt;p&gt;Merged to master.&lt;/p&gt;</comment>
                    </comments>
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