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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-428] reduceArc.py fails with Xenon data taken May 08, 2019</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-428</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;I am unable to run &lt;tt&gt;reduceArc.py&lt;/tt&gt; on the Xenon data taken at LAM on May 08, 2019.&lt;/p&gt;

&lt;p&gt;The main problem seem to be &lt;tt&gt;RuntimeError: You have not selected any lines from /tigress/HSC/PFS/stack/stack/miniconda3-4.3.21-10a4fa6/Linux64/obs_pfs/5.0-13-gd41bc6a/pfs/lineLists/ArCdHgKrNeXe.txt&lt;/tt&gt;.&lt;/p&gt;

&lt;p&gt;The script that I have used to ingest data and prepare calibrations is at: &lt;tt&gt;/home/ncaplar/ReductionScripts/May21/pfs_preparation_May.sh&lt;/tt&gt;. It uses the suggested &lt;tt&gt;pfs_build_calibs.sh&lt;/tt&gt;, which can also be found in the same folder.&lt;/p&gt;

&lt;p&gt;Script that I used, which has &lt;tt&gt;reduceArc.py&lt;/tt&gt; command, &lt;tt&gt;pfs_May22_Neon_May_defocus.sh&lt;/tt&gt;, is in the same folder.&lt;/p&gt;

&lt;p&gt;Note that with the same preparation, and using equivalent scripts, Neon and Krypton data passes &lt;tt&gt;reduceArc.py&lt;/tt&gt; command. &lt;/p&gt;

&lt;p&gt;The output from running the final script is at:&lt;br/&gt;
&lt;a href=&quot;https://gist.github.com/nevencaplar/7c83b215aa0104afa4252eb73000c0c2&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;https://gist.github.com/nevencaplar/7c83b215aa0104afa4252eb73000c0c2&lt;/a&gt;&lt;/p&gt;
</description>
                <environment></environment>
        <key id="13586">PIPE2D-428</key>
            <summary>reduceArc.py fails with Xenon data taken May 08, 2019</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="ncaplar">ncaplar</reporter>
                        <labels>
                    </labels>
                <created>Wed, 22 May 2019 14:10:36 +0000</created>
                <updated>Wed, 22 May 2019 16:34:51 +0000</updated>
                            <resolved>Wed, 22 May 2019 16:03:47 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>2</watches>
                                                                <comments>
                            <comment id="15489" author="price" created="Wed, 22 May 2019 15:12:36 +0000"  >&lt;p&gt;This is an easy one: we don&apos;t have a line list for Xe.&lt;/p&gt;</comment>
                            <comment id="15490" author="ncaplar" created="Wed, 22 May 2019 15:15:24 +0000"  >&lt;p&gt;Indeed, that is why I highlighted that line.&lt;/p&gt;</comment>
                            <comment id="15491" author="price" created="Wed, 22 May 2019 15:45:26 +0000"  >&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=ncaplar&quot; class=&quot;user-hover&quot; rel=&quot;ncaplar&quot;&gt;ncaplar&lt;/a&gt;, can you verify that the changes on branch &lt;tt&gt;tickets/&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-428&quot; title=&quot;reduceArc.py fails with Xenon data taken May 08, 2019&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-428&quot;&gt;&lt;del&gt;PIPE2D-428&lt;/del&gt;&lt;/a&gt;&lt;/tt&gt; of obs_pfs are sufficient to fix this?&lt;/p&gt;

&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
price@MacBook:~/pfs/obs_pfs (tickets/PIPE2D-428=) $ git sub
commit 92190db563f0bccc359078f27a0d0767ec13cf27 (HEAD -&amp;gt; tickets/PIPE2D-428, origin/tickets/PIPE2D-428)
Author: Paul Price &amp;lt;price@astro.princeton.edu&amp;gt;
Date:   Wed May 22 11:35:24 2019 -0400

    add line list &lt;span class=&quot;code-keyword&quot;&gt;for&lt;/span&gt; XeI
    
    Despite having &lt;span class=&quot;code-quote&quot;&gt;&apos;Xe&apos;&lt;/span&gt; in the filename, it didn&apos;t include Xe....

 pfs/lineLists/ArCdHgKrNeXe.txt | 644 ++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 643 insertions(+), 1 deletion(-)
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;</comment>
                            <comment id="15494" author="ncaplar" created="Wed, 22 May 2019 16:03:38 +0000"  >&lt;p&gt;Reduction passed successfully.&lt;/p&gt;</comment>
                    </comments>
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