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        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-401] Removal of HgAr continuum in focus and defocus</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-401</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;Contamination of the HgAr data with the continuum remains the problem. The reduction pipeline has algorithm that should remove this effect. &lt;br/&gt;
This is to 1. Estimate the quality of this subtraction - if good enough use this for focused images&lt;br/&gt;
2. Use the insights (i.e., the function form of the continuum as a function of wavelength) to subtract the defocused images, as well.&lt;/p&gt;</description>
                <environment></environment>
        <key id="13525">PIPE2D-401</key>
            <summary>Removal of HgAr continuum in focus and defocus</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="ncaplar">ncaplar</assignee>
                                    <reporter username="ncaplar">ncaplar</reporter>
                        <labels>
                    </labels>
                <created>Tue, 9 Apr 2019 17:17:06 +0000</created>
                <updated>Thu, 12 Mar 2020 14:38:03 +0000</updated>
                            <resolved>Thu, 27 Jun 2019 15:19:48 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>1</watches>
                                                                <comments>
                            <comment id="15651" author="ncaplar" created="Wed, 12 Jun 2019 19:24:27 +0000"  >&lt;p&gt;I have modified the code used in drp_stella in order to make a global fit to the continuum. I describe the steps below:&lt;/p&gt;

&lt;p&gt;1. I manually extract the flux with purest tophat-extraction from the image. Example of the extracted boxes is shown in the extraction_focus_defocus.png image.&lt;/p&gt;

&lt;p&gt;2. Then I fit the continuum with the Akima spline, drawing heavily from &lt;a href=&quot;https://github.com/Subaru-PFS/drp_stella/blob/master/python/pfs/drp/stella/fitContinuum.py&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;https://github.com/Subaru-PFS/drp_stella/blob/master/python/pfs/drp/stella/fitContinuum.py&lt;/a&gt;. The example of the results for one defocused image and focused image are shown in Continuum_DeFocus.png and Continuum_Focus.png images. Red shows the excluded data, black is the data that is fitted, blue shows the spline fit and yelow shows the residuals.&lt;/p&gt;

&lt;p&gt;3. I use that function to remove the continuum from images. The example is shown in Removal_of_continuum.png, where I shown removal in continuum for a single spot at various levels of defocus. For the moment I have deemed the quality to be ``sufficient&apos;&apos;, but this will soon be tested in realistic applications.&lt;/p&gt;</comment>
                            <comment id="15700" author="ncaplar" created="Thu, 27 Jun 2019 15:19:48 +0000"  >&lt;p&gt;I believe that the quality of the subtraction is ``good enough&apos;&apos;. This is based on the insight that I see no obvious influences of the continuum on the 2d modeling results of the F/2.8 and F/2.5 data taken in April and May of 2019. If the subtraction has to be improved further I will open new tickets.&lt;/p&gt;</comment>
                            <comment id="16846" author="ncaplar" created="Thu, 12 Mar 2020 14:38:03 +0000"  >&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=kiyoto.yabe&quot; class=&quot;user-hover&quot; rel=&quot;kiyoto.yabe&quot;&gt;Kiyoto Yabe&lt;/a&gt;&#160;see this ticket, it might be helpful&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;</comment>
                    </comments>
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                                        <issuelink>
            <issuekey id="13388">PIPE2D-379</issuekey>
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                <attachments>
                            <attachment id="12003" name="Continuum_DeFocus.png" size="101756" author="ncaplar" created="Wed, 12 Jun 2019 19:19:16 +0000"/>
                            <attachment id="12004" name="Continuum_Focus.png" size="186416" author="ncaplar" created="Wed, 12 Jun 2019 19:19:16 +0000"/>
                            <attachment id="12005" name="extraction_focus_defocus.png" size="830381" author="ncaplar" created="Wed, 12 Jun 2019 19:19:16 +0000"/>
                            <attachment id="12006" name="Removal_of_continuum.png" size="933429" author="ncaplar" created="Wed, 12 Jun 2019 19:19:16 +0000"/>
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