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        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-389] Populate COVAR2 coarse covariance matrix</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-389</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;The coarse 10x10 covariance matrix, COVAR2, of the 1-D spectrum output from the 2D DRP is defined in &lt;a href=&quot;https://github.com/Subaru-PFS/datamodel/blob/master/datamodel.txt&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;https://github.com/Subaru-PFS/datamodel/blob/master/datamodel.txt&lt;/a&gt; and is used to model the spectrophotometric errors. &lt;/p&gt;

&lt;p&gt;As part of the flux calibration activities, generate COVAR2 and populate the corresponding pfsObject HDU with that information.&lt;/p&gt;
</description>
                <environment></environment>
        <key id="13418">PIPE2D-389</key>
            <summary>Populate COVAR2 coarse covariance matrix</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
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                                    <resolution id="-1">Unresolved</resolution>
                                        <assignee username="msyktnk">Masayuki Tanaka</assignee>
                                    <reporter username="hassan">hassan</reporter>
                        <labels>
                            <label>flux-calibration</label>
                    </labels>
                <created>Fri, 8 Mar 2019 17:23:02 +0000</created>
                <updated>Mon, 3 Jul 2023 00:43:47 +0000</updated>
                                                                                <due></due>
                            <votes>0</votes>
                                    <watches>5</watches>
                                                                <comments>
                            <comment id="15096" author="msyktnk" created="Mon, 11 Mar 2019 01:41:18 +0000"  >&lt;p&gt;Could you please elaborate on this?&#160; Covariance from what process/procedure?&lt;/p&gt;</comment>
                            <comment id="15098" author="rhl" created="Mon, 11 Mar 2019 14:41:05 +0000"  >&lt;p&gt;The datamodel specifies a non-sparse covariance matrix COVAR2 which is supposed to capture the large-scale behaviour of the spectrophotometry (there&apos;s also a banded covariance matrix COVAR that captures the pixel-to-pixel errors and covariances). &#160; If we had an optical spectrograph covering grizy, then I&apos;d think of this as a 5x5 matrix with components that roughly correspond to the e.g. &lt;tt&gt;&amp;lt;(g - &amp;lt;g)&amp;gt;)(z - &amp;lt;z&amp;gt;)&amp;gt;&lt;/tt&gt; &#8211; i.e. the large scale errors in the spectrophotometry.  These could come from the uncertainty in the spectrophotometric standards, from the corrections due to guiding/fibre centring errors, the mismatch between the extended object and resolve object PSFs (and thus extraction errors), and other things that I don&apos;t yet understand!  &lt;/p&gt;

&lt;p&gt;I don&apos;t have a concrete proposal for how to measure these, e.g. what is the r&#244;le of the fibre magnitudes, but the flux calibration work seems to be the place to put this.&lt;/p&gt;

&lt;p&gt;&#160;The COVAR2 matrix is currently 10x10 because we have c. 5 optical photometric bands and sometimes some NIR information (J) and a factor of c. 2 oversampling seemed wise.&lt;/p&gt;</comment>
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