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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-377] Measure PFS cross-talk coefficients</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-377</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;Measure the cross-talk coefficients using very saturated arc lines. &#160;We can also do this using enough darks (as was done for HSC using Yagi-san&apos;s cosmic ray-based algorithm), but I suspect that the saturation trails are good enough.&lt;/p&gt;</description>
                <environment></environment>
        <key id="13378">PIPE2D-377</key>
            <summary>Measure PFS cross-talk coefficients</summary>
                <type id="1" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10503&amp;avatarType=issuetype">Bug</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="rhl">rhl</reporter>
                        <labels>
                    </labels>
                <created>Tue, 26 Feb 2019 14:28:55 +0000</created>
                <updated>Mon, 4 Jan 2021 20:23:08 +0000</updated>
                            <resolved>Fri, 26 Jun 2020 18:57:24 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>5</watches>
                                                                <comments>
                            <comment id="15019" author="hassan" created="Tue, 26 Feb 2019 17:55:58 +0000"  >&lt;p&gt;Neven: To accurately measure the coefficients we need to request more focused data from LAM with sufficient exposures to reveal the saturation trails. Neven will look into this.&lt;/p&gt;</comment>
                            <comment id="15020" author="cloomis" created="Tue, 26 Feb 2019 19:01:49 +0000"  >&lt;p&gt;Just an FYI: when I looked at this a long time ago, the crosstalk was bi-polar. The per-amp signals from the preamp to the ADC are differential twisted pairs, so that crosstalk can go either way. Should be stable for assembled cryostats....&lt;/p&gt;</comment>
                            <comment id="15034" author="ncaplar" created="Thu, 28 Feb 2019 18:02:25 +0000"  >&lt;p&gt;The data that are available for this ticket:&lt;/p&gt;

&lt;p&gt;12922 - 12960 the set of Neon data:&lt;br/&gt;
unsaturated data, exptime=15 sec with attenuator at 240&lt;br/&gt;
saturated  data, exptime=15 sec with no attenuator &lt;br/&gt;
saturated  data, exptime=100 sec with no attenuator &lt;br/&gt;
saturated  data, exptime=300 sec with no attenuator &lt;/p&gt;

&lt;p&gt;Robert recommended to work with saturated, ``bleeding&apos;&apos; data to easily identify which fibers crosstalk to where and to get good signal. Jim notes that this is only valuable if you know what is the flux in overexposed lines. In order to do that one would need to estimate flux from unsaturated exposures and then multiply by ratio of exposure time and take into account suppression by attenuator. Attenuator values have been deduced in &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-323&quot; title=&quot;Effects of attenuator on the flux for the LAM data&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-323&quot;&gt;&lt;del&gt;PIPE2D-323&lt;/del&gt;&lt;/a&gt; (see the coefficients in the Figures there).&lt;/p&gt;</comment>
                            <comment id="17337" author="price" created="Wed, 17 Jun 2020 01:55:27 +0000"  >&lt;p&gt;Using the LSST tool, &lt;tt&gt;measureCrosstalk.py&lt;/tt&gt; on &lt;tt&gt;visit=12922..12951&lt;/tt&gt; (the unsaturated data, which gives the best S/N), I get 2-3 sigma detections of the some of the crosstalk coefficients.&lt;/p&gt;
&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
measureCrosstalk INFO: Coefficients:
[[ 0.00000000e+00  1.44343314e-04 -1.94648110e-05 -3.16576757e-06  1.42585166e-04  8.77068742e-05  2.74841033e-04  1.67585129e-03]
 [ 1.25909573e-04  0.00000000e+00  1.67928265e-05  3.45523513e-05  1.35091439e-04  9.84909784e-05  1.21150915e-04  1.19224918e-04]
 [-3.17470112e-05 -2.45970878e-05  0.00000000e+00  3.19747371e-04  8.55176186e-05  7.86037490e-05  5.40274705e-05  7.14990747e-05]
 [ 2.50621597e-05 -6.37933866e-08  2.38304929e-04  0.00000000e+00  1.27087420e-04  2.85813672e-04  5.63632930e-05  9.70012043e-05]
 [ 1.15817631e-04  1.68083658e-04  1.64138619e-04  2.31510116e-04  0.00000000e+00  8.75362020e-05  4.00934223e-05 -1.93203887e-05]
 [ 1.18028176e-04  1.32240646e-04  1.25063758e-04  1.97395566e-04  1.74431858e-04  0.00000000e+00  1.02643426e-04 -1.42276876e-05]
 [ 1.72953616e-04  2.18197252e-04  3.94008151e-04  1.52665016e-04  1.58990340e-04  1.40468474e-04  0.00000000e+00  1.64068726e-04]
 [ 1.21380063e-03  1.64559446e-04  6.32526717e-05  8.29588462e-05 -3.57388853e-05 -2.21135579e-05  1.80654883e-04  0.00000000e+00]]
measureCrosstalk INFO: Errors:
[[           nan 9.91449488e-05 9.59764293e-05 9.13887925e-05  8.65858747e-05 9.88380634e-05 1.06215986e-04 5.50728524e-04]
 [9.51092006e-05            nan 9.34346172e-05 8.84959009e-05  8.87283604e-05 9.10020608e-05 8.01342321e-05 8.08069526e-05]
 [1.01827194e-04 1.00470643e-04            nan 1.04412786e-04  1.12072987e-04 1.05188803e-04 8.17734108e-05 8.59935826e-05]
 [9.88750107e-05 9.80467812e-05 9.92097339e-05            nan  1.03731429e-04 5.95550635e-04 7.89797268e-05 8.79871077e-05]
 [7.20556418e-05 8.66447008e-05 1.05128216e-04 9.71880945e-05             nan 9.30918904e-05 8.16232277e-05 7.48949533e-05]
 [7.40533360e-05 8.87360584e-05 8.47910414e-05 2.74526799e-04  9.22506442e-05            nan 8.18406988e-05 8.51190489e-05]
 [9.79577817e-05 1.00221820e-04 9.54559218e-05 9.06347123e-05  1.00276600e-04 1.07225656e-04            nan 1.23933671e-04]
 [1.95971646e-04 9.59757526e-05 8.57987689e-05 9.65587824e-05  1.04003899e-04 1.05910200e-04 1.08329492e-04            nan]]
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;</comment>
                            <comment id="17370" author="price" created="Wed, 24 Jun 2020 20:22:46 +0000"  >&lt;p&gt;I ended up using quartz exposures, as that provides a lot of target pixels (the full height of the image, rather than just a few discrete points). I&apos;m not perfectly happy with the result (there are some small residuals remaining), but it does a decent job and this provides a tool to make solid measurements in the future. Some thought needs to go into selecting a particular set of fibers that minimises the overlap between traces and crosstalk for the various amplifiers.&lt;/p&gt;

&lt;p&gt;This is based on &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-472&quot; title=&quot;Strategy for determining traces from non-odd/even high-density fiber data&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-472&quot;&gt;&lt;del&gt;PIPE2D-472&lt;/del&gt;&lt;/a&gt;, so that needs to be reviewed first.&lt;/p&gt;</comment>
                            <comment id="17385" author="price" created="Fri, 26 Jun 2020 18:57:24 +0000"  >&lt;p&gt;Merged to master.&lt;/p&gt;</comment>
                    </comments>
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            <issuekey id="13377">PIPE2D-376</issuekey>
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