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<channel>
    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
    </build-info>


<item>
            <title>[PIPE2D-374] Combine P_HSC and P_PFS and construct the best-fit spectrum</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-374</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;Following &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-367&quot; title=&quot;Derive P(Teff, log g, Z) from model templates&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-367&quot;&gt;PIPE2D-367&lt;/a&gt;, write code to combine the P_HSC(Teff, log g, Z) and P_PFS(Teff, log g, Z) probabilities in order to construct the best fit spectrum. &lt;/p&gt;</description>
                <environment></environment>
        <key id="13372">PIPE2D-374</key>
            <summary>Combine P_HSC and P_PFS and construct the best-fit spectrum</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="takuji.yamashita">Takuji Yamashita</assignee>
                                    <reporter username="hassan">hassan</reporter>
                        <labels>
                            <label>flux-calibration</label>
                            <label>model-spectra-fitting</label>
                    </labels>
                <created>Tue, 19 Feb 2019 21:01:40 +0000</created>
                <updated>Wed, 7 Jul 2021 05:06:00 +0000</updated>
                            <resolved>Tue, 6 Jul 2021 04:49:39 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>4</watches>
                                                                <comments>
                            <comment id="21396" author="takuji.yamashita" created="Mon, 7 Jun 2021 14:11:30 +0000"  >&lt;p&gt;I combined two probability distribution functions from broad-band fitting (&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-539&quot; title=&quot;Stellar typing with HSC broad-band data&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-539&quot;&gt;&lt;del&gt;PIPE2D-539&lt;/del&gt;&lt;/a&gt;) and chi-square fitting of spectra (&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-835&quot; title=&quot;Spectral fitting of ETC simulator spectra for flux calibration&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-835&quot;&gt;&lt;del&gt;PIPE2D-835&lt;/del&gt;&lt;/a&gt;) to find the best fit model template of a flux standard. The combination of two PDFs is a one-to-one merge.&lt;br/&gt;
 &#160;&lt;br/&gt;
 The following figures are the results of the simulated spectra with ETC and the HSC 5-bands photometry with S/N=100. The input stellar parameters of the ETC simulation are Teff = 7000 K, log(g/(cm/s^2)) = 4.5, Z = 0, and &lt;span class=&quot;error&quot;&gt;&amp;#91;a/Fe&amp;#93;&lt;/span&gt; = 0.0.&lt;br/&gt;
 &#160;&lt;br/&gt;
 A combined PDF of an r = 13 AB mag case, the PDF of the broad-band fitting, and the spectral fitting, from the top, respectively.&lt;/p&gt;

&lt;p&gt;&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13889_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13889/13889_BBP_p7000_g%2B4.5_m0.0_t01_z%2B0.00_a%2B0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.Cont.png&quot; title=&quot;BBP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.Cont.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13889&quot; file-preview-title=&quot;BBP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.Cont.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13892/_thumb_13892.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13889_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13889/13889_BBP_p7000_g%2B4.5_m0.0_t01_z%2B0.00_a%2B0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.Cont.png&quot; title=&quot;BBP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.Cont.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13889&quot; file-preview-title=&quot;BBP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.Cont.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13889/_thumb_13889.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13890_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13890/13890_SFP_p7000_g%2B4.5_m0.0_t01_z%2B0.00_a%2B0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.Cont.png&quot; title=&quot;SFP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.Cont.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13890&quot; file-preview-title=&quot;SFP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.Cont.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13890/_thumb_13890.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;The input spectrum (ETC) and the best-fit spectrum.&#160;&lt;/p&gt;

&lt;p&gt;&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13893_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13893/13893_CombinedP_p7000_g%2B4.5_m0.0_t01_z%2B0.00_a%2B0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.Spec.png&quot; title=&quot;CombinedP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.Spec.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13893&quot; file-preview-title=&quot;CombinedP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.Spec.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13893/_thumb_13893.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&#160;&lt;br/&gt;
A ratio of the best-fit spectrum to the input. There is a large deviation at a short wavelength of &amp;lt; 430 nm. This could be from small differences of Teff and log(g).&lt;br/&gt;
&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13894_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13894/13894_CombinedP_p7000_g%2B4.5_m0.0_t01_z%2B0.00_a%2B0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.SpecRatio.png&quot; title=&quot;CombinedP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.SpecRatio.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13894&quot; file-preview-title=&quot;CombinedP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r13.0.txt.expt450s.SpecRatio.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13894/_thumb_13894.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;
</comment>
                            <comment id="21397" author="takuji.yamashita" created="Mon, 7 Jun 2021 14:29:45 +0000"  >&lt;p&gt;These figures are the case of r = 19 mag. &lt;br/&gt;
The simulated spectrum is noisier, and therefore the constraint from spectral fitting is weak. As a result, the combined PDF is dominated by the broad-band fitting. &lt;/p&gt;

&lt;p&gt;A combined PDF.&lt;br/&gt;
&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13895_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13895/13895_CombinedP_p7000_g%2B4.5_m0.0_t01_z%2B0.00_a%2B0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Cont.png&quot; title=&quot;CombinedP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Cont.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13895&quot; file-preview-title=&quot;CombinedP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Cont.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13895/_thumb_13895.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;Broad-band fitting PDF.&lt;br/&gt;
&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13895_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13895/13895_CombinedP_p7000_g%2B4.5_m0.0_t01_z%2B0.00_a%2B0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Cont.png&quot; title=&quot;CombinedP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Cont.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13895&quot; file-preview-title=&quot;CombinedP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Cont.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13896/_thumb_13896.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;

&lt;p&gt;Spectral fitting PDF.&lt;br/&gt;
 &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13896_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13896/13896_BBP_p7000_g%2B4.5_m0.0_t01_z%2B0.00_a%2B0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Cont.png&quot; title=&quot;BBP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Cont.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13896&quot; file-preview-title=&quot;BBP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Cont.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13897/_thumb_13897.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;

&lt;p&gt;The best-fit spectrum and the input spectrum.&lt;br/&gt;
 &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13897_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13897/13897_SFP_p7000_g%2B4.5_m0.0_t01_z%2B0.00_a%2B0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Cont.png&quot; title=&quot;SFP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Cont.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13897&quot; file-preview-title=&quot;SFP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Cont.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13898/_thumb_13898.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;

&lt;p&gt;The flux ratio of the best-fit to the input.&lt;br/&gt;
&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13898_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13898/13898_CombinedP_p7000_g%2B4.5_m0.0_t01_z%2B0.00_a%2B0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Spec.png&quot; title=&quot;CombinedP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Spec.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13898&quot; file-preview-title=&quot;CombinedP_p7000_g+4.5_m0.0_t01_z+0.00_a+0.00.AMBRE_Extp.ABmag_r19.0.txt.expt450s.Spec.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13899/_thumb_13899.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;

</comment>
                            <comment id="21398" author="takuji.yamashita" created="Mon, 7 Jun 2021 14:30:43 +0000"  >&lt;p&gt;This is the fitting accuracy as a function of the magnitude. The y-axis is the median absolute deviation of the flux ratio of the best-fit to the input. &lt;/p&gt;

&lt;p&gt; &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13929_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13929/13929_mad_rmag_wlimit.png&quot; title=&quot;mad_rmag_wlimit.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13929&quot; file-preview-title=&quot;mad_rmag_wlimit.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13900/_thumb_13900.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;</comment>
                            <comment id="21533" author="takuji.yamashita" created="Mon, 21 Jun 2021 05:56:31 +0000"  >&lt;p&gt;The measured dispersions in the flux ratio of the best-fit spectrum to the simulation spectrum are dominated by the noise in the simulation spectra. I add the dispersion only from the noise in a spectrum in the above figure (open red circles). The measured dispersions are close to the noise dispersions.&lt;br/&gt;
&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13900_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13900/13900_mad_rmag.png&quot; title=&quot;mad_rmag.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13900&quot; file-preview-title=&quot;mad_rmag.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13929/_thumb_13929.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;</comment>
                            <comment id="21534" author="takuji.yamashita" created="Mon, 21 Jun 2021 06:00:17 +0000"  >&lt;p&gt;In the three arms, the blue arm has an offset from the noise dispersions. This is due to a mismatch of the best-fit model to the simulation in the blue arm. We should improve this.&#160;&lt;br/&gt;
&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;13929_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13929/13929_mad_rmag_wlimit.png&quot; title=&quot;mad_rmag_wlimit.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;13929&quot; file-preview-title=&quot;mad_rmag_wlimit.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/13930/_thumb_13930.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;&lt;br/&gt;
&#160;&lt;br/&gt;
The flux ratios of the best-fit and the simulation are small compared with the noise in the spectra in this test case. We should check other cases to see the fitting goodness.&lt;/p&gt;</comment>
                            <comment id="21646" author="takuji.yamashita" created="Tue, 6 Jul 2021 04:48:47 +0000"  >&lt;p&gt;The above test shows that the fitting accuracy is about 10% for 19 magnitude stars. Although this is higher than the 1% accuracy we are aiming at, we think we can improve it by the following approaches.&#160;&lt;/p&gt;

&lt;p&gt;1. Because we will have several tens of standard stars in an FoV, we can statistically reduce the accuracy by combining all the standards.&#160;&lt;/p&gt;

&lt;p&gt;2. The dispersion of the flux ratio is dominated by the noise in the simulated spectrum. Because we expect that a flux calibration vector is smooth along the wavelength, we can fit it with a function and reduce the dispersions.&#160;&lt;/p&gt;

&lt;p&gt;These works to improve the fitting accuracy will be addressed during the implementation phase.&#160;&lt;/p&gt;</comment>
                            <comment id="21651" author="price" created="Tue, 6 Jul 2021 14:39:35 +0000"  >&lt;p&gt;You can&apos;t assume that the flux calibration vector is completely smooth in wavelength: it should include the atmospheric absorption bands.&lt;/p&gt;</comment>
                            <comment id="21653" author="takuji.yamashita" created="Wed, 7 Jul 2021 05:06:00 +0000"  >&lt;p&gt;Yes. Please let me make a few corrections and add some words. The flux calibration vector includes both a smooth component and a non-smooth one.&lt;/p&gt;

&lt;p&gt;Although this idea needs further investigation and discussion, for example, we will fit the smooth component in the flux calibration vector with a function after masking the atmospheric absorption bands to separate the smooth component from the vector. We will use the averaged flux calibration vector with a high S/N over an FoV for this. The non-smooth component made up of the atmospheric absorption bands will be reproduced using a template or a model. By combining the fitted smooth component and the reproduced non-smooth one, we will get a more accurate flux calibration vector.&lt;/p&gt;</comment>
                    </comments>
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