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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-359] Set up regular pipeline runs using real (LAM) data</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-359</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;Princeton are receiving LAM data regularly on the &lt;tt&gt;/tigress&lt;/tt&gt; filesystem on their internal cluster. The 2DDRP pipeline should be run against those data frequently.&lt;/p&gt;

&lt;p&gt;The raw LAM data consists of:&lt;/p&gt;
&lt;ol&gt;
	&lt;li&gt;Raw biases&lt;/li&gt;
	&lt;li&gt;Raw darks&lt;/li&gt;
	&lt;li&gt;Raw dithered flats&lt;/li&gt;
	&lt;li&gt;Raw flats&lt;/li&gt;
	&lt;li&gt;Raw arc images&lt;/li&gt;
&lt;/ol&gt;


&lt;p&gt;The extent of the pipeline run should be such that all of these data types be reduced, with the resultant products being&lt;/p&gt;
&lt;ol&gt;
	&lt;li&gt;Biases&lt;/li&gt;
	&lt;li&gt;Darks&lt;/li&gt;
	&lt;li&gt;Flats&lt;/li&gt;
	&lt;li&gt;FiberTraces&lt;/li&gt;
	&lt;li&gt;Updated detectorMaps.&lt;/li&gt;
&lt;/ol&gt;


&lt;p&gt;The pipeline can be ran manually at this stage, with the user providing the necessary visits. Automation will be the subject of a separate ticket when this is needed.&lt;/p&gt;</description>
                <environment></environment>
        <key id="13351">PIPE2D-359</key>
            <summary>Set up regular pipeline runs using real (LAM) data</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="hassan">hassan</reporter>
                        <labels>
                    </labels>
                <created>Mon, 18 Feb 2019 22:02:51 +0000</created>
                <updated>Tue, 21 May 2019 14:10:04 +0000</updated>
                            <resolved>Mon, 1 Apr 2019 01:18:20 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>6</watches>
                                                                <comments>
                            <comment id="15138" author="price" created="Tue, 19 Mar 2019 19:33:38 +0000"  >&lt;p&gt;Based on offline discussion with &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=hassan&quot; class=&quot;user-hover&quot; rel=&quot;hassan&quot;&gt;hassan&lt;/a&gt;, I understand that what is wanted is a script that will run the calib construction part of the pipeline, given a set of biases, darks, flats and arcs identified by the user. This can be adapted from the existing integration test script.&lt;/p&gt;</comment>
                            <comment id="15140" author="price" created="Tue, 19 Mar 2019 22:58:37 +0000"  >&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=hassan&quot; class=&quot;user-hover&quot; rel=&quot;hassan&quot;&gt;hassan&lt;/a&gt;, could you please check that this is sufficient?&lt;/p&gt;</comment>
                            <comment id="15153" author="ncaplar" created="Thu, 21 Mar 2019 16:09:42 +0000"  >&lt;p&gt;Before I forget, numbers for the data that we currently have:&lt;/p&gt;

&lt;h3&gt;&lt;a name=&quot;Neondatanumbers%3A&quot;&gt;&lt;/a&gt;Neon data numbers:&lt;/h3&gt;
&lt;p&gt;bias: 12122..12136&lt;br/&gt;
dark: 12137..12166&lt;br/&gt;
flat: 12167..12171&lt;br/&gt;
ditheredFlats: 12172..12300&lt;/p&gt;

&lt;p&gt;focused data:&lt;br/&gt;
12355..12360&lt;br/&gt;
12415...12477&lt;/p&gt;

&lt;p&gt;defocused data:&lt;br/&gt;
12301..12354&lt;br/&gt;
12361..12414&lt;/p&gt;


</comment>
                            <comment id="15154" author="ncaplar" created="Thu, 21 Mar 2019 16:11:37 +0000"  >&lt;p&gt;HgAr data numbers:&lt;br/&gt;
bias: 11485..11499&lt;br/&gt;
dark: 11500..11529&lt;br/&gt;
flat: 11530..11534&lt;br/&gt;
ditheredFlats: 11535..11663&lt;/p&gt;

&lt;p&gt;focused data:&lt;br/&gt;
11664..11693&lt;br/&gt;
11748..11753&lt;br/&gt;
11808..11834&lt;/p&gt;

&lt;p&gt;defocused data:&lt;br/&gt;
11694..11747&lt;br/&gt;
11754..11807&lt;/p&gt;</comment>
                            <comment id="15155" author="ncaplar" created="Thu, 21 Mar 2019 16:16:57 +0000"  >&lt;p&gt;Krypton data numbers&lt;/p&gt;

&lt;p&gt;bias:  13128..13152 (but have no DATE-OBS)  - DO NOT USE  - see &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-424&quot; title=&quot;Investigate very wide traces &quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-424&quot;&gt;&lt;del&gt;PIPE2D-424&lt;/del&gt;&lt;/a&gt;&lt;br/&gt;
dark: 13153..13182 (but have no DATE-OBS)  - DO NOT USE - see &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-424&quot; title=&quot;Investigate very wide traces &quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-424&quot;&gt;&lt;del&gt;PIPE2D-424&lt;/del&gt;&lt;/a&gt;&lt;br/&gt;
flat: 13183..13187 - DO NOT USE - see &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-424&quot; title=&quot;Investigate very wide traces &quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-424&quot;&gt;&lt;del&gt;PIPE2D-424&lt;/del&gt;&lt;/a&gt;&lt;br/&gt;
ditheredFlats: 13188..13316  - DO NOT USE - see &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-424&quot; title=&quot;Investigate very wide traces &quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-424&quot;&gt;&lt;del&gt;PIPE2D-424&lt;/del&gt;&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;focused data:&lt;br/&gt;
12922..12996&lt;br/&gt;
13051..13056&lt;br/&gt;
13111..113137&lt;/p&gt;

&lt;p&gt;defocused data:&lt;br/&gt;
12997..13050&lt;br/&gt;
13057..13110&lt;/p&gt;</comment>
                            <comment id="15209" author="hassan" created="Thu, 28 Mar 2019 20:39:20 +0000"  >&lt;p&gt;Initial implementation viewed as done. Further work may be required as we more understanding of LAM needs etc.&lt;/p&gt;</comment>
                            <comment id="15218" author="price" created="Mon, 1 Apr 2019 01:18:20 +0000"  >&lt;p&gt;Merged to master.&lt;/p&gt;</comment>
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