https://pfspipe.ipmu.jp/jira This file is an XML representation of an issue en-us 8.3.4 803005 13-09-2019 https://pfspipe.ipmu.jp/jira/browse/PIPE2D-293 DRP 2-D Pipeline <p><a href="https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=fmadec" class="user-hover" rel="fmadec">fmadec</a> reports:</p> <div class="code panel" style="border-width: 1px;"><div class="codeContent panelContent"> <pre class="code-java"> [pfs@1cfe7a2b3699 ics_drpActor]$ export TARGET=/drp/lam [pfs@1cfe7a2b3699 ics_drpActor]$ export RERUN=pfs [pfs@1cfe7a2b3699 ics_drpActor]$ export batchArgs=<span class="code-quote">"--batch-type=none --doraise"</span> [pfs@1cfe7a2b3699 ics_drpActor]$ constructFiberFlat.py $TARGET --calib $TARGET/CALIB --rerun $RERUN/calib --id visit=9627..9692 $batchArgs Traceback (most recent call last): File <span class="code-quote">"/opt/lsst/software/stack/stack/miniconda3-4.3.21-10a4fa6/Linux64/drp_stella/1d712c3c7fd8146b89ce5b803da2e0ac5ef99ad7/bin/constructFiberFlat.py"</span>, line 2, in &lt;module&gt; from pfs.drp.stella.constructFiberFlatTask <span class="code-keyword">import</span> ConstructFiberFlatTask File <span class="code-quote">"/opt/lsst/software/stack/stack/miniconda3-4.3.21-10a4fa6/Linux64/drp_stella/1d712c3c7fd8146b89ce5b803da2e0ac5ef99ad7/python/pfs/drp/stella/__init__.py"</span>, line 3, in &lt;module&gt; from .spectraContinued <span class="code-keyword">import</span> * File <span class="code-quote">"/opt/lsst/software/stack/stack/miniconda3-4.3.21-10a4fa6/Linux64/drp_stella/1d712c3c7fd8146b89ce5b803da2e0ac5ef99ad7/python/pfs/drp/stella/spectraContinued.py"</span>, line 12, in &lt;module&gt; from pfs.datamodel.pfsArm <span class="code-keyword">import</span> PfsArm, PfsConfig File <span class="code-quote">"/opt/lsst/software/stack/stack/miniconda3-4.3.21-10a4fa6/Linux64/datamodel/264fb7b46bfa4c56f9c31e5b128850ba3f4a4776/python/pfs/datamodel/pfsArm.py"</span>, line 13, in &lt;module&gt; <span class="code-keyword">import</span> matplotlib.pyplot as plt File <span class="code-quote">"/software/conda/lib/python3.6/site-packages/matplotlib/pyplot.py"</span>, line 31, in &lt;module&gt; <span class="code-keyword">import</span> matplotlib.colorbar File <span class="code-quote">"/software/conda/lib/python3.6/site-packages/matplotlib/colorbar.py"</span>, line 36, in &lt;module&gt; <span class="code-keyword">import</span> matplotlib.contour as contour File <span class="code-quote">"/software/conda/lib/python3.6/site-packages/matplotlib/contour.py"</span>, line 20, in &lt;module&gt; <span class="code-keyword">import</span> matplotlib.font_manager as font_manager File <span class="code-quote">"/software/conda/lib/python3.6/site-packages/matplotlib/font_manager.py"</span>, line 55, in &lt;module&gt; from matplotlib <span class="code-keyword">import</span> afm, cbook, ft2font, rcParams, get_cachedir ImportError: /opt/lsst/software/stack/python/miniconda3-4.3.21/lib/python3.6/lib-dynload/../../libz.so.1: version `ZLIB_1.2.9' not found (required by /software/conda/lib/python3.6/site-packages/matplotlib/../../.././libpng16.so.16) </pre> </div></div> <p>The failure to <tt>import matplotlib</tt> is not something I can do anything about (it seems to be from mixing <tt>conda</tt>\ s), but I can make the <tt>import matplotlib</tt> optional.</p> PIPE2D-293

Make matplotlib imports optional

Story Normal Done Done price price Tue, 2 Oct 2018 15:39:33 +0000 Wed, 3 Oct 2018 01:44:16 +0000 Wed, 3 Oct 2018 01:44:16 +0000 0 1 <p>Does this look reasonable, <a href="https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=cloomis" class="user-hover" rel="cloomis">cloomis</a>?</p> <div class="code panel" style="border-width: 1px;"><div class="codeContent panelContent"> <pre class="code-java"> price@neverland:~/pfs/datamodel (tickets/PIPE2D-293=) $ git sub commit 8b6cb8a5298a946bd8df88d60a7149265800f84f Author: Paul Price &lt;price@astro.princeton.edu&gt; Date: Tue Oct 2 11:52:59 2018 -0400 pfsArm: make flake8-clean python/pfs/datamodel/pfsArm.py | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) commit b92d4e9fefb9d7181ffa045390702a30daa32b27 Author: Paul Price &lt;price@astro.princeton.edu&gt; Date: Tue Oct 2 11:57:01 2018 -0400 pfsArm: make matplotlib optional matplotlib is only used <span class="code-keyword">for</span> plotting, so there's no need to <span class="code-keyword">import</span> it <span class="code-keyword">for</span> general use. python/pfs/datamodel/pfsArm.py | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) commit a72e26e0ff21303a61d7517f0ffe0b16da87da5e Author: Paul Price &lt;price@astro.princeton.edu&gt; Date: Tue Oct 2 12:03:59 2018 -0400 pfsObject: make flake8-clean python/pfs/datamodel/pfsObject.py | 32 +++++++++++++++++--------------- 1 file changed, 17 insertions(+), 15 deletions(-) commit 6c9569172a462b6802b26151681c46591bcb0f98 Author: Paul Price &lt;price@astro.princeton.edu&gt; Date: Tue Oct 2 12:04:24 2018 -0400 pfsObject: make matplotlib optional matplotlib is only used <span class="code-keyword">for</span> plotting, so there's no need to <span class="code-keyword">import</span> it <span class="code-keyword">for</span> general use. python/pfs/datamodel/pfsObject.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) </pre> </div></div> <p>Thanks Craig!</p> <p>Merged to master, along with a few small changes to the Travis scripts that maybe (???) made a difference in getting things to pass.</p> Development Rank 0|s00160: Reviewers cloomis