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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
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        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-277] Continuum subtract arc spectra in 2-d</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-277</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;The HgAr lamp spectra that we are taking at LAM (and maybe all HgAr spectra!) have what looks like a significant continuum.&lt;/p&gt;

&lt;p&gt;While not important for wavelength calibrations, this matters for PSF determination.&lt;/p&gt;

&lt;p&gt;We think that all the spectra show this, but for definiteness:&lt;/p&gt;

&lt;p&gt;Neven has looked at 8603, 8604, 8605 (all in focus), are 859* are also in focus, but dithered, and for instance for defocus is 8564.&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;The way to fix this is to do an extraction, mask the lines and fit the continuum, then use something like the&#160;self.debugInfo.residuals_frame code in reduceArcTask.py (the workhorse is ft.getReconstructed2DSpectrum(spec))&lt;/p&gt;</description>
                <environment></environment>
        <key id="12219">PIPE2D-277</key>
            <summary>Continuum subtract arc spectra in 2-d</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="rhl">rhl</reporter>
                        <labels>
                    </labels>
                <created>Thu, 19 Apr 2018 21:00:25 +0000</created>
                <updated>Thu, 3 May 2018 16:42:55 +0000</updated>
                            <resolved>Thu, 3 May 2018 16:42:55 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>4</watches>
                                                                <comments>
                            <comment id="13138" author="cloomis" created="Thu, 19 Apr 2018 21:47:23 +0000"  >&lt;p&gt;And yes, 8937 etc. also show it, and will have the same configuration as the other 2017-12-20 reference data.&lt;/p&gt;</comment>
                            <comment id="13309" author="price" created="Fri, 27 Apr 2018 16:56:19 +0000"  >&lt;p&gt;I&apos;ve got this working. The only thing I&apos;m concerned about is that the fiber trace appears to be off horizontally (as seen by an asymmetric horizontal profile through the continuum-subtracted image), but I don&apos;t think that has anything to do with this feature.&lt;/p&gt;</comment>
                            <comment id="13310" author="price" created="Fri, 27 Apr 2018 17:25:45 +0000"  >&lt;p&gt;Based my work off &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-214&quot; title=&quot;reduceArc should take a set of arcs and produce a pfsArm file&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-214&quot;&gt;&lt;del&gt;PIPE2D-214&lt;/del&gt;&lt;/a&gt;.&lt;/p&gt;</comment>
                            <comment id="13311" author="price" created="Sat, 28 Apr 2018 02:36:26 +0000"  >&lt;p&gt;OK, &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=rhl&quot; class=&quot;user-hover&quot; rel=&quot;rhl&quot;&gt;rhl&lt;/a&gt;, I think this is ready for you. It&apos;s based on &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-214&quot; title=&quot;reduceArc should take a set of arcs and produce a pfsArm file&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-214&quot;&gt;&lt;del&gt;PIPE2D-214&lt;/del&gt;&lt;/a&gt;, so you could review all of this and kill two birds with one stone.&lt;/p&gt;</comment>
                            <comment id="13322" author="price" created="Mon, 30 Apr 2018 21:06:01 +0000"  >&lt;p&gt;Taking this back, as I&apos;ve just discovered that the tests in drp_stella are not passing. These tests have not been firing under Travis because drp_stella_data was only being installed for the integration test, so was unavailable at the time drp_stella was being built.&lt;/p&gt;</comment>
                            <comment id="13375" author="price" created="Thu, 3 May 2018 16:42:55 +0000"  >&lt;p&gt;Merged to master without detailed review (though I did drop the commit &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=rhl&quot; class=&quot;user-hover&quot; rel=&quot;rhl&quot;&gt;rhl&lt;/a&gt; questioned). The reason for this that there&apos;s a lot of cleanup coming, and it will be easier to simply review the state of the code after the cleanup than to approve every change piecemeal.&lt;/p&gt;</comment>
                    </comments>
                    <attachments>
                            <attachment id="11201" name="continuum-image.png" size="323542" author="price" created="Fri, 27 Apr 2018 16:54:46 +0000"/>
                            <attachment id="11200" name="continuum.png" size="46167" author="price" created="Fri, 27 Apr 2018 16:32:35 +0000"/>
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