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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
    </build-info>


<item>
            <title>[PIPE2D-1310] Diagnose sky subtraction problems after updating calibs</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-1310</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=siegeljc&quot; class=&quot;user-hover&quot; rel=&quot;siegeljc&quot;&gt;Jared Siegel&lt;/a&gt; reports a significant degradation in sky subtraction performance following updating from &lt;tt&gt;CALIB-2023-07-v4&lt;/tt&gt; to &lt;tt&gt;CALIB-2023-07-v5&lt;/tt&gt;. The update only involved fixing the validity ranges for the fiberProfiles, so all arms should now be using the (correct) July fiberProfiles to reduce his exposure except n3 (which didn&apos;t have fiberProfiles for April 2023).&lt;/p&gt;

&lt;p&gt;Jared&apos;s reduction script:&lt;/p&gt;
&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
. /scratch/gpfs/HSC/PFS/stack/current/loadLSST.bash

setup pfs_pipe2d w.2023.37

reduceExposure.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB --rerun=siegeljc/10 -j 8 --id visit=97252 -c isr.doFlat=False

&amp;lt;Fiber reassignment, to set N% to sky fibers&amp;gt;

reduceExposure.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB --rerun=siegeljc/10 -j 8 --id visit=97252 -c isr.doFlat=False

mergeArms.py /projects/HSC/PFS/Subaru --calib=/projects/HSC/PFS/Subaru/CALIB --rerun=siegeljc/10 -j 8 --id visit=97252
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;</description>
                <environment></environment>
        <key id="24047">PIPE2D-1310</key>
            <summary>Diagnose sky subtraction problems after updating calibs</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="price">price</reporter>
                        <labels>
                            <label>EDR</label>
                    </labels>
                <created>Thu, 5 Oct 2023 18:22:28 +0000</created>
                <updated>Fri, 17 Nov 2023 20:37:53 +0000</updated>
                            <resolved>Fri, 17 Nov 2023 20:37:53 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>2</watches>
                                                                <comments>
                            <comment id="35401" author="price" created="Thu, 5 Oct 2023 21:36:36 +0000"  >&lt;p&gt;Confirmed the changes seen by &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=siegeljc&quot; class=&quot;user-hover&quot; rel=&quot;siegeljc&quot;&gt;Jared Siegel&lt;/a&gt;. I have done the sky subtraction on 97252r1 separately for v4 calibs and v5 calibs, and subtracted. There are clear differences, as seen in the plot below.&lt;/p&gt;

&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=arnaud.lefur&quot; class=&quot;user-hover&quot; rel=&quot;arnaud.lefur&quot;&gt;arnaud.lefur&lt;/a&gt; has pointed out the existence of &quot;shoulders&quot; in the fiber profiles at +/- 9 pixels with an amplitude of about 1% (both in v4 and v5, but with slight differences). There appears to be a fundamental problem in the construction of the fiber profiles. Given that both v4 and v5 are bad in this regard, I&apos;m going to aim to fix the problem and not worry about the change.&lt;/p&gt;

&lt;p&gt;&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/16545/16545_97252r1_v4-v5.png&quot; width=&quot;900&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/span&gt;&lt;/p&gt;</comment>
                            <comment id="35402" author="arnaud.lefur" created="Thu, 5 Oct 2023 22:08:48 +0000"  >&lt;p&gt;I wonder if it comes from flats used for the normalization in the fiberProfiles construction :&lt;br/&gt;
96938..96944  and those were taken without the flat screen.&lt;br/&gt;
I would try with 97037..97045 which were taken the day after, with the flat screen in.&lt;br/&gt;
Might or might not fix the issue but worth trying.&lt;/p&gt;</comment>
                            <comment id="35419" author="arnaud.lefur" created="Fri, 6 Oct 2023 22:42:50 +0000"  >&lt;p&gt;Follow &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-1311&quot; title=&quot;investigate shoulder features in the fiberProfiles&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-1311&quot;&gt;PIPE2D-1311&lt;/a&gt; for the shoulder feature investigation.&lt;br/&gt;
In the meantime, I&apos;ve regenerated fiberProfiles for r1, changing the normalization visits.&lt;br/&gt;
&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=siegeljc&quot; class=&quot;user-hover&quot; rel=&quot;siegeljc&quot;&gt;Jared Siegel&lt;/a&gt; is currently re-reducing the data using those and hopefully find improved residuals.&lt;/p&gt;</comment>
                            <comment id="35425" author="arnaud.lefur" created="Mon, 9 Oct 2023 20:36:07 +0000"  >&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=siegeljc&quot; class=&quot;user-hover&quot; rel=&quot;siegeljc&quot;&gt;Jared Siegel&lt;/a&gt; confirm that the new r1 profiles did improve greatly the residuals, the results are now closely in line with April data &lt;br/&gt;
 &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;16549_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/16549/16549_97252-newResid_histograms.png&quot; title=&quot;97252-newResid_histograms.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;16549&quot; file-preview-title=&quot;97252-newResid_histograms.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/16550/_thumb_16550.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;  &lt;br/&gt;
 &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;16549_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/16549/16549_97252-newResid_histograms.png&quot; title=&quot;97252-newResid_histograms.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;16549&quot; file-preview-title=&quot;97252-newResid_histograms.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/16549/_thumb_16549.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;br/&gt;
I&apos;m going forward and now re-building fiberProfiles for the other arm/spectrograph.&lt;br/&gt;
I will add those to CALIB-2023-07-v6&lt;/p&gt;</comment>
                            <comment id="35426" author="arnaud.lefur" created="Mon, 9 Oct 2023 20:39:11 +0000"  >&lt;p&gt;for m arm, it&apos;s slightly trickier because I don&apos;t think we&apos;ve taken any traces with the flat screen in...&lt;/p&gt;</comment>
                            <comment id="35936" author="arnaud.lefur" created="Fri, 17 Nov 2023 20:37:53 +0000"  >&lt;p&gt;Turned out the main issue came from the visits used in the fiberProfiles normalization &lt;/p&gt;</comment>
                    </comments>
                    <attachments>
                            <attachment id="16549" name="97252-newResid_histograms.png" size="117089" author="arnaud.lefur" created="Mon, 9 Oct 2023 20:28:51 +0000"/>
                            <attachment id="16545" name="97252r1_v4-v5.png" size="1669760" author="price" created="Thu, 5 Oct 2023 21:31:18 +0000"/>
                            <attachment id="16550" name="97252_resid.png" size="545370" author="arnaud.lefur" created="Mon, 9 Oct 2023 20:28:51 +0000"/>
                    </attachments>
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