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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-1236] Bootstrap r2 from LAM</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-1236</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;We&apos;re having a difficult time getting a bootstrapped detectorMap for r2 at LAM. The command is:&lt;/p&gt;
&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
bootstrapDetectorMap.py /data/drp/sps --calib=/data/drp/sps/CALIB/ --rerun fmadec/r2/bootstrap --flatId visit=49492 arm=r --arcId visit=49491 arm=r -c isr.doBias=False isr.doDark=False isr.doFlat=False --clobber-config
&lt;/pre&gt;
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                <environment></environment>
        <key id="23472">PIPE2D-1236</key>
            <summary>Bootstrap r2 from LAM</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="price">price</reporter>
                        <labels>
                    </labels>
                <created>Mon, 12 Jun 2023 17:20:46 +0000</created>
                <updated>Mon, 12 Jun 2023 18:40:34 +0000</updated>
                            <resolved>Mon, 12 Jun 2023 18:40:34 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>2</watches>
                                                                <comments>
                            <comment id="32790" author="price" created="Mon, 12 Jun 2023 18:36:17 +0000"  >&lt;p&gt;It looks like the main problem is that the presence of scattered light is adversely affecting the determination of the fiber trace positions. That can be remedied by using a higher threshold in the profile finder (150 --&amp;gt; 5000). It also helps to give it a guess to the spectral offset (-35 pixels relative to the simulator detectorMap).&lt;/p&gt;

&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
bootstrapDetectorMap.py /home/pfs/pfs/pipe2d-1236/DATA --calib=/home/pfs/pfs/pipe2d-1236/DATA/CALIB --rerun price/20230612 --flatId visit=49492 arm=r --arcId visit=49491 arm=r -c isr.doBias=False isr.doDark=False isr.doFlat=False isr.doDefect=False spectralOffset=-35 profiles.findThreshold=5000 rejThreshold=5
[...]
bootstrap INFO: Found 229 lines in 10 traces
bootstrap INFO: Matched 209 lines
bootstrap INFO: Median difference from detectorMap: 39.237676,-2.268927 pixels
bootstrap INFO: Fit 98/102 points, rms: x=0.149891 y=0.220934 total=0.098593 pixels
bootstrap INFO: Updating detectorMap...
bootstrap INFO: Median difference from detectorMap: 31.482860,5.180965 pixels
bootstrap INFO: Fit 106/107 points, rms: x=0.208369 y=0.202141 total=0.104056 pixels
bootstrap INFO: Updating detectorMap...
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;</comment>
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