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    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
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        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE2D-1176] Sky subtraction removes only c. 50% of the sky flux</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-1176</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;While looking at spectra from the 2022-11 run I noticed that fibre 437 appears to have only had c. half of the sky flux removed. &#160;For comparison, fibres 435 and 436 look OK.&lt;/p&gt;
&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
fid target   status   spot   norm   mag
435 SCIENCE  GOOD     1.000  0.755  15.75
436 SKY      GOOD     1.000  1.019  NaN
437 SCIENCE  GOOD     1.000  0.652  15.73 &lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;</description>
                <environment></environment>
        <key id="23275">PIPE2D-1176</key>
            <summary>Sky subtraction removes only c. 50% of the sky flux</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="rhl">rhl</reporter>
                        <labels>
                    </labels>
                <created>Wed, 1 Mar 2023 23:36:43 +0000</created>
                <updated>Thu, 27 Apr 2023 18:29:55 +0000</updated>
                            <resolved>Thu, 27 Apr 2023 18:29:55 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>3</watches>
                                                                <comments>
                            <comment id="32403" author="price" created="Wed, 15 Mar 2023 01:25:03 +0000"  >&lt;p&gt;It looks like this is due to fiberId=437 being near a black spot (distance = 0.77 mm) for the quartz observation used to construct the fiber profiles. I&apos;ll add the black spot correction to this part of the code too.&lt;/p&gt;</comment>
                            <comment id="32404" author="yuki.moritani" created="Wed, 15 Mar 2023 01:49:10 +0000"  >&lt;p&gt;Probably this is off topic (I&apos;m sorry) ... At present, we are taking quarts/arc data at home position, at which some fiber suffer from the dot penumbra.. Is it better to move cobras to obscuration-free position?&#160;&lt;/p&gt;</comment>
                            <comment id="32405" author="price" created="Wed, 15 Mar 2023 01:55:29 +0000"  >&lt;p&gt;Unless there is a clear need to have the cobras at particular positions (e.g., repeating sky observations for some reason, hiding cobras behind black spots), all calibs should be taken with all the cobras completely un-obscured. The obscuration wastes photons and if it doesn&apos;t degrade the quality, at least makes the interpretation of the calibs more difficult.&lt;/p&gt;</comment>
                            <comment id="32410" author="price" created="Wed, 15 Mar 2023 18:03:12 +0000"  >&lt;p&gt;Applying the black spot correction to the quartz fixed the problem, as shown below.&lt;br/&gt;
I&apos;ll fold this fix into &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-1175&quot; title=&quot;measure fiberProfiles from fewer swaths&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-1175&quot;&gt;&lt;del&gt;PIPE2D-1175&lt;/del&gt;&lt;/a&gt;/&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-907&quot; title=&quot;Solve profiles for multiple fibers simultaneously&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-907&quot;&gt;&lt;del&gt;PIPE2D-907&lt;/del&gt;&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/15574/15574_pipe2d-1176-fix.png&quot; width=&quot;1000&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/span&gt;&lt;/p&gt;</comment>
                            <comment id="32629" author="price" created="Thu, 27 Apr 2023 18:29:55 +0000"  >&lt;p&gt;Merged along with &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-907&quot; title=&quot;Solve profiles for multiple fibers simultaneously&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-907&quot;&gt;&lt;del&gt;PIPE2D-907&lt;/del&gt;&lt;/a&gt;.&lt;/p&gt;</comment>
                    </comments>
                    <attachments>
                            <attachment id="15574" name="pipe2d-1176-fix.png" size="360609" author="price" created="Wed, 15 Mar 2023 18:02:24 +0000"/>
                            <attachment id="15549" name="Spectra (4).png" size="210787" author="rhl" created="Wed, 1 Mar 2023 23:35:29 +0000"/>
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