<!-- 
RSS generated by JIRA (8.3.4#803005-sha1:1f96e09b3c60279a408a2ae47be3c745f571388b) at Sat Feb 10 16:03:49 JST 2024

It is possible to restrict the fields that are returned in this document by specifying the 'field' parameter in your request.
For example, to request only the issue key and summary append 'field=key&field=summary' to the URL of your request.
-->
<rss version="0.92" >
<channel>
    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
    </build-info>


<item>
            <title>[PIPE2D-1175] measure fiberProfiles from fewer swaths</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-1175</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;Extractions near bright object are problematic right now, as &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=kiyoto.yabe&quot; class=&quot;user-hover&quot; rel=&quot;kiyoto.yabe&quot;&gt;Kiyoto Yabe&lt;/a&gt; shared here  &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;15548_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/15548/15548_fiberProfiles%2C+1-every-fourth.png&quot; title=&quot;fiberProfiles, 1-every-fourth.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;15548&quot; file-preview-title=&quot;fiberProfiles, 1-every-fourth.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/15547/_thumb_15547.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;We can see on this plot that those fibers are contaminated by signal coming from the neighbouring fibers.&lt;/p&gt;

&lt;p&gt;Try to build to fiberProfiles with narrower swaths, or any other method that you think could improve the extraction in the context of the engineering data release.&lt;/p&gt;

&lt;p&gt;But, in longer terms, measuring good odd and even profiles and solve for them simultaneously should still be a better option, IMHO.&lt;/p&gt;</description>
                <environment></environment>
        <key id="23274">PIPE2D-1175</key>
            <summary>measure fiberProfiles from fewer swaths</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="arnaud.lefur">arnaud.lefur</reporter>
                        <labels>
                    </labels>
                <created>Wed, 1 Mar 2023 14:51:18 +0000</created>
                <updated>Mon, 27 Mar 2023 17:24:33 +0000</updated>
                            <resolved>Mon, 27 Mar 2023 17:24:33 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>2</watches>
                                                                <comments>
                            <comment id="32325" author="price" created="Wed, 1 Mar 2023 20:24:26 +0000"  >&lt;p&gt;Neither a smaller radius nor fewer swaths nor both together is sufficient to prevent the steps in the extraction.&lt;/p&gt;</comment>
                            <comment id="32326" author="arnaud.lefur" created="Wed, 1 Mar 2023 21:47:37 +0000"  >&lt;p&gt;Have you quantified by how much the neighbouring fibers are contaminated ? Yabe-san figure shows quite high level.&lt;br/&gt;
I looked at the only &lt;em&gt;1-every-4th&lt;/em&gt; fiber profiles we have from november : &lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;a id=&quot;15548_thumb&quot; href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/15548/15548_fiberProfiles%2C+1-every-fourth.png&quot; title=&quot;fiberProfiles, 1-every-fourth.png&quot; file-preview-type=&quot;image&quot; file-preview-id=&quot;15548&quot; file-preview-title=&quot;fiberProfiles, 1-every-fourth.png&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/thumbnail/15548/_thumb_15548.png&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/a&gt;&lt;/span&gt; &lt;br/&gt;
The first neighbours show contamination less than 1%.&lt;/p&gt;</comment>
                            <comment id="32327" author="price" created="Wed, 1 Mar 2023 21:52:48 +0000"  >&lt;p&gt;I don&apos;t believe this is an issue with contamination: a profile with a radius of two pixels should have zero overlap with neighbouring fibers. Rather, I believe there&apos;s a problem with how the profile is used in the extraction.&lt;/p&gt;</comment>
                            <comment id="32329" author="arnaud.lefur" created="Wed, 1 Mar 2023 22:51:29 +0000"  >&lt;p&gt;Well, I agree there is no overlap in the profiles themselves.&lt;br/&gt;
But again, if my understanding is correct, so far, as a good approximation, we considered that each pixel is some flux measured from one object &lt;b&gt;only&lt;/b&gt; right ?&lt;br/&gt;
But because of the wings, each pixel is actually the sum of multiple objects with some weights.&lt;br/&gt;
The problem is we don&apos;t know those weights, and until we do there is nothing much we can do.&lt;br/&gt;
That&apos;s what I called contamination, the fact that if you have an bright object that peak at 20k in one fiber, then the pixels from neighbouring fibers will get an extra 200 counts on top of their own object.&lt;/p&gt;</comment>
                            <comment id="32330" author="price" created="Wed, 1 Mar 2023 23:20:32 +0000"  >&lt;p&gt;Sure, but that can&apos;t produce the strong steps in the extracted spectrum.&lt;/p&gt;</comment>
                            <comment id="32342" author="price" created="Fri, 3 Mar 2023 21:44:49 +0000"  >&lt;p&gt;The steps in the spectra are remedied if the profiles go to zero. Currently, they don&apos;t because they were measured on full-fiber-density images and therefore have small &lt;tt&gt;radius&lt;/tt&gt;, so the outermost profile samples are signficantly above zero. If I force them to zero (by subtracting the average of the outermost samples), the steps disappear. The attached plot shows the same fibers as before, but from a pfsArm.&lt;/p&gt;

&lt;p&gt;&lt;span class=&quot;image-wrap&quot; style=&quot;&quot;&gt;&lt;img src=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/15553/15553_pfsArm-83244-r3.jpg&quot; width=&quot;1000&quot; style=&quot;border: 0px solid black&quot; /&gt;&lt;/span&gt;&lt;/p&gt;</comment>
                            <comment id="32347" author="price" created="Fri, 3 Mar 2023 23:23:32 +0000"  >&lt;p&gt;Updated the &lt;tt&gt;CALIB&lt;/tt&gt; in &lt;tt&gt;/work/drp&lt;/tt&gt; at Subaru and in &lt;tt&gt;/projects/HSC/PFS/Subaru&lt;/tt&gt; on Tiger at Princeton.&lt;/p&gt;</comment>
                            <comment id="32478" author="arnaud.lefur" created="Mon, 27 Mar 2023 17:24:33 +0000"  >&lt;p&gt;Paul did some experiments, but without actual improvement.&lt;br/&gt;
Again, profiles are now generated differently (&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-907&quot; title=&quot;Solve profiles for multiple fibers simultaneously&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-907&quot;&gt;&lt;del&gt;PIPE2D-907&lt;/del&gt;&lt;/a&gt;), should be wider and less subject to that kind of issues. &lt;/p&gt;</comment>
                    </comments>
                    <attachments>
                            <attachment id="15548" name="fiberProfiles, 1-every-fourth.png" size="58031" author="arnaud.lefur" created="Wed, 1 Mar 2023 21:44:14 +0000"/>
                            <attachment id="15547" name="image-2023-03-01-09-39-08-421.png" size="125063" author="arnaud.lefur" created="Wed, 1 Mar 2023 14:39:11 +0000"/>
                            <attachment id="15553" name="pfsArm-83244-r3.jpg" size="279114" author="price" created="Fri, 3 Mar 2023 21:44:00 +0000"/>
                    </attachments>
                <subtasks>
                    </subtasks>
                <customfields>
                                                <customfield id="customfield_10500" key="com.atlassian.jira.plugins.jira-development-integration-plugin:devsummary">
                        <customfieldname>Development</customfieldname>
                        <customfieldvalues>
                            
                        </customfieldvalues>
                    </customfield>
                                                                                                                                                                                                            <customfield id="customfield_10010" key="com.pyxis.greenhopper.jira:gh-lexo-rank">
                        <customfieldname>Rank</customfieldname>
                        <customfieldvalues>
                            <customfieldvalue>0|zzswc7:</customfieldvalue>

                        </customfieldvalues>
                    </customfield>
                                                                                                                        <customfield id="customfield_10005" key="com.pyxis.greenhopper.jira:gh-sprint">
                        <customfieldname>Sprint</customfieldname>
                        <customfieldvalues>
                                <customfieldvalue id="162">2DDRP-2023 A</customfieldvalue>

                        </customfieldvalues>
                    </customfield>
                                                                                                                                                    </customfields>
    </item>
</channel>
</rss>