<!-- 
RSS generated by JIRA (8.3.4#803005-sha1:1f96e09b3c60279a408a2ae47be3c745f571388b) at Sat Feb 10 16:03:15 JST 2024

It is possible to restrict the fields that are returned in this document by specifying the 'field' parameter in your request.
For example, to request only the issue key and summary append 'field=key&field=summary' to the URL of your request.
-->
<rss version="0.92" >
<channel>
    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
    </build-info>


<item>
            <title>[PIPE2D-1136] Correctly subtract the dark signal seen on r3</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-1136</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;There is a bright defect in the r3 camera which doesn&apos;t subtract out well with the dark frame processing, presumably because its amplitude varies with time.&lt;/p&gt;

&lt;p&gt;Please change the code to estimate the amplitude of the defect based on the part of the CCD where there are no fibre traces.&lt;/p&gt;

&lt;p&gt;Note that this cannot, in theory, simply be done by adjusting the amplitude of the dark frame as there may well be a stable and unstable component.  An interesting experiment would be to carry out a PCA decomposition of the darks and measure the dimensionality of the needed solution.&lt;/p&gt;</description>
                <environment></environment>
        <key id="23183">PIPE2D-1136</key>
            <summary>Correctly subtract the dark signal seen on r3</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="rhl">rhl</assignee>
                                    <reporter username="rhl">rhl</reporter>
                        <labels>
                    </labels>
                <created>Wed, 21 Dec 2022 21:28:34 +0000</created>
                <updated>Wed, 22 Feb 2023 00:56:45 +0000</updated>
                            <resolved>Thu, 5 Jan 2023 15:16:44 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>2</watches>
                                                                <comments>
                            <comment id="32029" author="rhl" created="Wed, 21 Dec 2022 21:29:30 +0000"  >&lt;p&gt;An example is 83149&lt;/p&gt;</comment>
                            <comment id="32030" author="hassan" created="Wed, 21 Dec 2022 21:34:28 +0000"  >&lt;p&gt;Attached &lt;tt&gt;calexp&lt;/tt&gt; images (with and without corrections for the dark current) of &lt;tt&gt;r3&lt;/tt&gt; and &lt;tt&gt;m3&lt;/tt&gt; visits showing the abnormality.&lt;/p&gt;</comment>
                            <comment id="32046" author="rhl" created="Wed, 28 Dec 2022 18:33:08 +0000"  >&lt;p&gt;&lt;a href=&quot;https://github.com/Subaru-PFS/obs_pfs/pull/142&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;https://github.com/Subaru-PFS/obs_pfs/pull/142&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="32047" author="rhl" created="Wed, 28 Dec 2022 18:34:10 +0000"  >&lt;p&gt;See &lt;a href=&quot;https://sumire-pfs.slack.com/archives/C3AU3VCMU/p1672247056447469&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;https://sumire-pfs.slack.com/archives/C3AU3VCMU/p1672247056447469&lt;/a&gt; for illustrations of successful testing of this code.&lt;/p&gt;</comment>
                            <comment id="32048" author="rhl" created="Tue, 3 Jan 2023 17:55:52 +0000"  >&lt;p&gt;N.b.  The code assumes that there are no bad pixels in the dark.  This needs to be fixed (maybe in a different ticket);  although we don&apos;t want saturated pixels in the darks they may happen and then both the dark generation and the code that uses the darks need to be modified.&lt;/p&gt;</comment>
                            <comment id="32063" author="rhl" created="Thu, 5 Jan 2023 15:16:44 +0000"  >&lt;p&gt;As discussed on slack, we won&apos;t worry about versioning the BBoxes just yet.&lt;/p&gt;

&lt;p&gt;Also added code to handle masked pixels in darks and data, contrary to remarks made in my previous comment.&lt;/p&gt;</comment>
                    </comments>
                <issuelinks>
                            <issuelinktype id="10003">
                    <name>Relates</name>
                                            <outwardlinks description="relates to">
                                        <issuelink>
            <issuekey id="23263">PIPE2D-1169</issuekey>
        </issuelink>
                            </outwardlinks>
                                                        </issuelinktype>
                    </issuelinks>
                <attachments>
                            <attachment id="15485" name="Figure 1-3.png" size="851304" author="hassan" created="Wed, 21 Dec 2022 21:32:49 +0000"/>
                            <attachment id="15484" name="Figure 2-2.png" size="852749" author="hassan" created="Wed, 21 Dec 2022 21:32:49 +0000"/>
                            <attachment id="15483" name="Figure 3.png" size="756722" author="hassan" created="Wed, 21 Dec 2022 21:32:49 +0000"/>
                            <attachment id="15482" name="Figure 4.png" size="819847" author="hassan" created="Wed, 21 Dec 2022 21:32:49 +0000"/>
                            <attachment id="15481" name="Figure 5.png" size="833035" author="hassan" created="Wed, 21 Dec 2022 21:32:49 +0000"/>
                            <attachment id="15480" name="Figure 6.png" size="853959" author="hassan" created="Wed, 21 Dec 2022 21:32:49 +0000"/>
                            <attachment id="15479" name="Figure 7.png" size="858508" author="hassan" created="Wed, 21 Dec 2022 21:32:49 +0000"/>
                            <attachment id="15478" name="Figure 8.png" size="860713" author="hassan" created="Wed, 21 Dec 2022 21:32:49 +0000"/>
                    </attachments>
                <subtasks>
                    </subtasks>
                <customfields>
                                                                            <customfield id="customfield_10500" key="com.atlassian.jira.plugins.jira-development-integration-plugin:devsummary">
                        <customfieldname>Development</customfieldname>
                        <customfieldvalues>
                            
                        </customfieldvalues>
                    </customfield>
                                                                                                                                                                                                            <customfield id="customfield_10010" key="com.pyxis.greenhopper.jira:gh-lexo-rank">
                        <customfieldname>Rank</customfieldname>
                        <customfieldvalues>
                            <customfieldvalue>0|02qpjd:00r20060i20018</customfieldvalue>

                        </customfieldvalues>
                    </customfield>
                                                                                            <customfield id="customfield_10100" key="com.atlassian.jira.plugin.system.customfieldtypes:userpicker">
                        <customfieldname>Reviewers</customfieldname>
                        <customfieldvalues>
                            <customfieldvalue>price</customfieldvalue>

                        </customfieldvalues>
                    </customfield>
                                                                                                                                                                                </customfields>
    </item>
</channel>
</rss>