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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
    </build-info>


<item>
            <title>[PIPE2D-1069] Process June 2022 PFI non-uniformity data</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE2D-1069</link>
                <project id="10002" key="PIPE2D">DRP 2-D Pipeline</project>
                    <description>&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=yuki.moritani&quot; class=&quot;user-hover&quot; rel=&quot;yuki.moritani&quot;&gt;yuki.moritani&lt;/a&gt; has acquired visits &lt;tt&gt;76389..76398&lt;/tt&gt; to study the apparent non-uniformity of the illumination of fibers on the PFI, which appears to vary as a function of instrument angle (InR).&lt;/p&gt;

&lt;p&gt;Please process these visits.&lt;/p&gt;</description>
                <environment></environment>
        <key id="22910">PIPE2D-1069</key>
            <summary>Process June 2022 PFI non-uniformity data</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="hassan">hassan</assignee>
                                    <reporter username="hassan">hassan</reporter>
                        <labels>
                    </labels>
                <created>Fri, 12 Aug 2022 14:38:47 +0000</created>
                <updated>Tue, 16 Aug 2022 23:53:43 +0000</updated>
                            <resolved>Tue, 16 Aug 2022 23:51:24 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>1</watches>
                                                                <comments>
                            <comment id="31229" author="hassan" created="Tue, 16 Aug 2022 23:20:38 +0000"  >&lt;p&gt;The actual valid visits are &lt;tt&gt;76389..76396^76398&lt;/tt&gt;, as visit &lt;tt&gt;76397&lt;/tt&gt; is not an SPS exposure. &lt;/p&gt;

&lt;p&gt;Note that for those valid visits, a 100W halogen lamp was used, replacing a 50W halogen lamp. The latter lamp was used for earlier data taken during Sept 2021 for a similar experiment (visits &lt;tt&gt;68424..68427&lt;/tt&gt;). See also &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-902&quot; title=&quot;Measure the flux of calibration lamps and compare explicitly with prediction from Jim &amp;amp; Erin&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-902&quot;&gt;&lt;del&gt;PIPE2D-902&lt;/del&gt;&lt;/a&gt;.&lt;/p&gt;</comment>
                            <comment id="31230" author="hassan" created="Tue, 16 Aug 2022 23:36:38 +0000"  >&lt;p&gt;June 2022 data processed by DRP using the following command line:&lt;/p&gt;
&lt;div class=&quot;code panel&quot; style=&quot;border-width: 1px;&quot;&gt;&lt;div class=&quot;codeContent panelContent&quot;&gt;
&lt;pre class=&quot;code-java&quot;&gt;
reduceExposure.py /projects/HSC/PFS/Subaru --calib /projects/HSC/PFS/Subaru/CALIB-20220630 --rerun hassans/dev/pipe2d-1069-20220812a --id visit=76389..76397^76398 arm=b^r -c isr.doFlat=False isr.doWrite=True repair.doCosmicRay=False
&lt;/pre&gt;
&lt;/div&gt;&lt;/div&gt;
&lt;p&gt;The Sep 2021 data were re-processed following the same prescription.&lt;/p&gt;

&lt;p&gt;The integrated flux for each fiber across the &lt;tt&gt;r&lt;/tt&gt;&#160;band were computed from the &lt;tt&gt;pfsArm&lt;/tt&gt; data and scaled according to the following formula: &lt;tt&gt;(flux-refFlux)/np.median(refFlux)&lt;/tt&gt; where &lt;tt&gt;flux&lt;/tt&gt; is the original integrated flux array (one element per fiber), &lt;tt&gt;refFlux&lt;/tt&gt; and the corresponding integrated flux array for a &apos;reference&apos; visit, &lt;tt&gt;76398&lt;/tt&gt; with instrument rotator &lt;tt&gt;InR&lt;/tt&gt; of 90deg, from the same June 2022 group of visits.&lt;/p&gt;

&lt;p&gt;For each visit, the scaled flux for each fiber is plotted in &lt;tt&gt;PFI_mm&lt;/tt&gt; coordinates using the cobra design position taken from the Grand Fiber Map, as shown in &lt;span class=&quot;nobr&quot;&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/15307/15307_PFI_scaledflux_June2022.png&quot; title=&quot;PFI_scaledflux_June2022.png attached to PIPE2D-1069&quot;&gt;PFI_scaledflux_June2022.png&lt;sup&gt;&lt;img class=&quot;rendericon&quot; src=&quot;https://pfspipe.ipmu.jp/jira/images/icons/link_attachment_7.gif&quot; height=&quot;7&quot; width=&quot;7&quot; align=&quot;absmiddle&quot; alt=&quot;&quot; border=&quot;0&quot;/&gt;&lt;/sup&gt;&lt;/a&gt;&lt;/span&gt;.&lt;/p&gt;

&lt;p&gt;The data from the Sept 2021 run were plotted similarly, using the reference visit &lt;tt&gt;68426&lt;/tt&gt;, again with &lt;tt&gt;InR=90deg&lt;/tt&gt;. See &lt;span class=&quot;nobr&quot;&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/15308/15308_PFI_scaledflux_Sep2021.png&quot; title=&quot;PFI_scaledflux_Sep2021.png attached to PIPE2D-1069&quot;&gt;PFI_scaledflux_Sep2021.png&lt;sup&gt;&lt;img class=&quot;rendericon&quot; src=&quot;https://pfspipe.ipmu.jp/jira/images/icons/link_attachment_7.gif&quot; height=&quot;7&quot; width=&quot;7&quot; align=&quot;absmiddle&quot; alt=&quot;&quot; border=&quot;0&quot;/&gt;&lt;/sup&gt;&lt;/a&gt;&lt;/span&gt;.&lt;/p&gt;

&lt;p&gt;The structure that was noticed originally in the Sept 2021 data is unfortunately still apparent in the June 2022 data. Look in particular at visit &lt;tt&gt;76391&#160;(&lt;/tt&gt;&lt;tt&gt;InR=-90deg)&lt;/tt&gt;&#160;in the June 2022 data, and compare that with that for visit &lt;tt&gt;68424&lt;/tt&gt; (same InR) in the Sep 2021 data.&lt;/p&gt;</comment>
                            <comment id="31231" author="hassan" created="Tue, 16 Aug 2022 23:51:16 +0000"  >&lt;p&gt;Jupyter notebook used committed to github: &lt;a href=&quot;https://github.com/Subaru-PFS/dev_2ddrp/blob/master/notebooks/PIPE2D-1069%20(June2022%20PFI%20non-uniformity).ipynb&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;https://github.com/Subaru-PFS/dev_2ddrp/blob/master/notebooks/PIPE2D-1069%20(June2022%20PFI%20non-uniformity).ipynb&lt;/a&gt;&lt;/p&gt;</comment>
                    </comments>
                <issuelinks>
                            <issuelinktype id="10003">
                    <name>Relates</name>
                                                                <inwardlinks description="relates to">
                                        <issuelink>
            <issuekey id="17053">PIPE2D-902</issuekey>
        </issuelink>
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                <attachments>
                            <attachment id="15307" name="PFI_scaledflux_June2022.png" size="598088" author="hassan" created="Tue, 16 Aug 2022 23:22:52 +0000"/>
                            <attachment id="15308" name="PFI_scaledflux_Sep2021.png" size="390905" author="hassan" created="Tue, 16 Aug 2022 23:22:52 +0000"/>
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