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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE1D-51] Bad redshift determination with version 0.22.0?</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE1D-51</link>
                <project id="10700" key="PIPE1D">DRP 1D pipeline</project>
                    <description>&lt;p&gt;The simple sanity check on the redshift determination in the recent end-to-end processing (see attached) seems to show strangely bad redshift determination. The redshifts from 1D pipeline are mostly ~0.9 or ~2.3. Could you confirm that this is real or I&apos;m doing something wrong? I&apos;m using version 0.22.0 and the configuration is attached. The results are also in &lt;a href=&quot;https://pfs.ipmu.jp/internal/devarch/ipmu/pipe_e2e/&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;https://pfs.ipmu.jp/internal/devarch/ipmu/pipe_e2e/&lt;/a&gt;&#160;.&lt;/p&gt;

&lt;p&gt;&lt;span class=&quot;nobr&quot;&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13957/13957_check_redshift_determination.pdf&quot; title=&quot;check_redshift_determination.pdf attached to PIPE1D-51&quot;&gt;check_redshift_determination.pdf&lt;sup&gt;&lt;img class=&quot;rendericon&quot; src=&quot;https://pfspipe.ipmu.jp/jira/images/icons/link_attachment_7.gif&quot; height=&quot;7&quot; width=&quot;7&quot; align=&quot;absmiddle&quot; alt=&quot;&quot; border=&quot;0&quot;/&gt;&lt;/sup&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;sup&gt;&lt;span class=&quot;nobr&quot;&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13956/13956_parameters_e2e.json&quot; title=&quot;parameters_e2e.json attached to PIPE1D-51&quot;&gt;parameters_e2e.json&lt;sup&gt;&lt;img class=&quot;rendericon&quot; src=&quot;https://pfspipe.ipmu.jp/jira/images/icons/link_attachment_7.gif&quot; height=&quot;7&quot; width=&quot;7&quot; align=&quot;absmiddle&quot; alt=&quot;&quot; border=&quot;0&quot;/&gt;&lt;/sup&gt;&lt;/a&gt;&lt;/span&gt;&lt;/sup&gt;&lt;/p&gt;</description>
                <environment></environment>
        <key id="16969">PIPE1D-51</key>
            <summary>Bad redshift determination with version 0.22.0?</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10100" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="No further work should be done on this.">Won&apos;t Fix</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="2">Won&apos;t Fix</resolution>
                                        <assignee username="vlebrun">vlebrun</assignee>
                                    <reporter username="kiyoto.yabe">Kiyoto Yabe</reporter>
                        <labels>
                            <label>DRP_end-to-end_processing</label>
                    </labels>
                <created>Mon, 26 Jul 2021 00:54:58 +0000</created>
                <updated>Thu, 9 Sep 2021 08:04:53 +0000</updated>
                            <resolved>Thu, 9 Sep 2021 08:04:39 +0000</resolved>
                                                                    <component>drp_1d</component>
                    <component>drp_1dpipe</component>
                        <due></due>
                            <votes>0</votes>
                                    <watches>5</watches>
                                                                <comments>
                            <comment id="21743" author="kiyoto.yabe" created="Mon, 26 Jul 2021 05:19:58 +0000"  >&lt;p&gt;This may be due to the issue in &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE2D-873&quot; title=&quot;Siginificant negative values at &amp;gt;1200nm in pfsObject?&quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE2D-873&quot;&gt;&lt;del&gt;PIPE2D-873&lt;/del&gt;&lt;/a&gt;, which will be resolved with the new simulated data.&lt;/p&gt;</comment>
                            <comment id="21764" author="kiyoto.yabe" created="Mon, 2 Aug 2021 05:10:01 +0000"  >&lt;p&gt;This is an example pfsObject, which is z=1.4979 object but the 1D result is&#160;2.2925.&#160;&lt;/p&gt;

&lt;p&gt;&lt;span class=&quot;nobr&quot;&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13962/13962_pfsObject-00001-00000-0%2C0-0000000000000318-006-0x7ace412dc05971ff.fits&quot; title=&quot;pfsObject-00001-00000-0,0-0000000000000318-006-0x7ace412dc05971ff.fits attached to PIPE1D-51&quot;&gt;pfsObject-00001-00000-0,0-0000000000000318-006-0x7ace412dc05971ff.fits&lt;sup&gt;&lt;img class=&quot;rendericon&quot; src=&quot;https://pfspipe.ipmu.jp/jira/images/icons/link_attachment_7.gif&quot; height=&quot;7&quot; width=&quot;7&quot; align=&quot;absmiddle&quot; alt=&quot;&quot; border=&quot;0&quot;/&gt;&lt;/sup&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;</comment>
                            <comment id="21874" author="vlebrun" created="Thu, 26 Aug 2021 16:06:34 +0000"  >&lt;p&gt;The two horizontal lines in the z_meas vs z_true plot are typical of artefacts at given wavelength that are mistaken for emission lines. z=2.29 is a redshift for which OII corresponds to a strong sky emission line, and therefore the subtraction residual can be identified as OII (see plot&#160;&lt;span class=&quot;nobr&quot;&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/13971/13971_Skyline_1226nm&quot; title=&quot;Skyline_1226nm attached to PIPE1D-51&quot;&gt;Skyline_1226nm&lt;sup&gt;&lt;img class=&quot;rendericon&quot; src=&quot;https://pfspipe.ipmu.jp/jira/images/icons/link_attachment_7.gif&quot; height=&quot;7&quot; width=&quot;7&quot; align=&quot;absmiddle&quot; alt=&quot;&quot; border=&quot;0&quot;/&gt;&lt;/sup&gt;&lt;/a&gt;&lt;/span&gt;). We have to check the associated variance, and decide wether we&apos;ll have to mask this spectrum part.&lt;/p&gt;</comment>
                            <comment id="21925" author="vlebrun" created="Wed, 8 Sep 2021 15:18:59 +0000"  >&lt;p&gt;Indeed the error associated to the spectrum does not indicate that this pseudo emission line is not real but the mask has a non zero value. We therefore have to include the mask values in the 1D pipeline. I&apos;ll open a new ticket&lt;/p&gt;</comment>
                            <comment id="21931" author="kiyoto.yabe" created="Wed, 8 Sep 2021 23:34:15 +0000"  >&lt;p&gt;Thank you for the investigation. Can I close this ticket and move to the new ticket?&lt;/p&gt;</comment>
                            <comment id="21934" author="vlebrun" created="Thu, 9 Sep 2021 07:39:01 +0000"  >&lt;p&gt;yes for sure&lt;/p&gt;</comment>
                            <comment id="21935" author="kiyoto.yabe" created="Thu, 9 Sep 2021 08:04:53 +0000"  >&lt;p&gt;OK, thank you. I closed this one.&lt;/p&gt;</comment>
                    </comments>
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                            <attachment id="13957" name="check_redshift_determination.pdf" size="22001" author="kiyoto.yabe" created="Mon, 26 Jul 2021 00:51:39 +0000"/>
                            <attachment id="13956" name="parameters_e2e.json" size="1934" author="kiyoto.yabe" created="Mon, 26 Jul 2021 00:52:22 +0000"/>
                            <attachment id="13962" name="pfsObject-00001-00000-0,0-0000000000000318-006-0x7ace412dc05971ff.fits" size="941760" author="kiyoto.yabe" created="Mon, 2 Aug 2021 05:07:48 +0000"/>
                            <attachment id="13971" name="Skyline_1226nm" size="13726" author="vlebrun" created="Thu, 26 Aug 2021 16:04:27 +0000"/>
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