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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[PIPE1D-23] Updating stellar templates in the calibration files </title>
                <link>https://pfspipe.ipmu.jp/jira/browse/PIPE1D-23</link>
                <project id="10700" key="PIPE1D">DRP 1D pipeline</project>
                    <description>&lt;p&gt;I&apos;m running &quot;tickets/&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/PIPE1D-17&quot; title=&quot;The latest drp_1d, drp_1dpipe produce error messages when they run with an input pfsObject***.fits from the latest ETC. &quot; class=&quot;issue-link&quot; data-issue-key=&quot;PIPE1D-17&quot;&gt;&lt;del&gt;PIPE1D-17&lt;/del&gt;&lt;/a&gt;&quot; branch of drp_1dpipe (0.14.0_rc2) with an input stellar spectrum and with&#160;calibration files from &quot;datapack_0.14.0_rc2&quot;. In the calibration files, stellar templates are stored in&#160;stars_templates_vlba37_2018 and&#160;specified in &quot;calibration/calibration_config.txt&quot;. These templates have low spectral resolution (R&amp;lt;1000?) and with a wavelength sampling (~5 angstroms). For line-of-site velocity measurements in the GA science, we would need a higher resolution (R~5000) with a denser wavelength sampling.&#160;&lt;/p&gt;

&lt;p&gt;It would be great if you could include stellar templates with a higher spectral resolution and with a wavelength sampling of 0.5-1 angstroms. &#160;The Xshooter library seems to be suitable in terms of the wavelength coverage and the spectral resolution. &#160;Alternatively, is it possible to use a set of custom templates in the current pipeline? I have tried to run the code with a custom template contained in a directory specified in&#160;calibration/calibration_config.txt. I got messages attached below. I&apos;m sorry if I missed something but your suggestions are very helpful.&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;***************************************************&lt;/p&gt;

&lt;p&gt;Traceback (most recent call last):&lt;/p&gt;

&lt;p&gt;&#160; File &quot;/Users/ishigakimiho/opt/anaconda2/envs/py36/lib/python3.6/site-packages/drp_1dpipe/merge_results/merge_results.py&quot;, line 86, in main_method&lt;/p&gt;

&lt;p&gt;&#160; &#160; amazed_results.read()&lt;/p&gt;

&lt;p&gt;&#160; File &quot;/Users/ishigakimiho/opt/anaconda2/envs/py36/lib/python3.6/site-packages/drp_1dpipe/process_spectra/results.py&quot;, line 92, in read&lt;/p&gt;

&lt;p&gt;&#160; &#160; raise FileNotFoundError(&quot;No redshift summary file detected : {}&quot;.format(path))&lt;/p&gt;

&lt;p&gt;FileNotFoundError: No redshift summary file detected : /Users/ishigakimiho/PFS/pipeline/GAtest/drp1d_spectra_20200914T111536Z/B0/redshift.csv&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;During handling of the above exception, another exception occurred:&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;Traceback (most recent call last):&lt;/p&gt;

&lt;p&gt;&#160; File &quot;/Users/ishigakimiho/opt/anaconda2/envs/py36/bin/merge_results&quot;, line 8, in &amp;lt;module&amp;gt;&lt;/p&gt;

&lt;p&gt;&#160; &#160; sys.exit(main())&lt;/p&gt;

&lt;p&gt;&#160; File &quot;/Users/ishigakimiho/opt/anaconda2/envs/py36/lib/python3.6/site-packages/drp_1dpipe/merge_results/merge_results.py&quot;, line 135, in main&lt;/p&gt;

&lt;p&gt;&#160; &#160; return main_method(config)&lt;/p&gt;

&lt;p&gt;&#160; File &quot;/Users/ishigakimiho/opt/anaconda2/envs/py36/lib/python3.6/site-packages/drp_1dpipe/merge_results/merge_results.py&quot;, line 89, in main_method&lt;/p&gt;

&lt;p&gt;&#160; &#160; raise FileNotFoundError(&quot;Redshift summary file not found in {}&quot;.format(bunch))&lt;/p&gt;

&lt;p&gt;FileNotFoundError: Redshift summary file not found in /Users/ishigakimiho/PFS/pipeline/GAtest/drp1d_spectra_20200914T111536Z/B0&lt;/p&gt;

&lt;p&gt;warning: can&apos;t delete /Users/ishigakimiho/PFS/pipeline/GAtest/drp1d_spectra_20200914T111536Z/B0/pfsObject-000-00000-0,0-0000000000000001-001-0x8cf7641568bdb4ab&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;</description>
                <environment></environment>
        <key id="14800">PIPE1D-23</key>
            <summary>Updating stellar templates in the calibration files </summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="vlebrun">vlebrun</assignee>
                                    <reporter username="ishigaki">ishigaki</reporter>
                        <labels>
                    </labels>
                <created>Mon, 14 Sep 2020 02:22:20 +0000</created>
                <updated>Fri, 25 Sep 2020 13:22:11 +0000</updated>
                            <resolved>Fri, 25 Sep 2020 13:22:11 +0000</resolved>
                                                                    <component>drp_1d</component>
                    <component>drp_1dpipe</component>
                        <due></due>
                            <votes>0</votes>
                                    <watches>2</watches>
                                                                <comments>
                            <comment id="17721" author="ali.allaoui" created="Wed, 23 Sep 2020 13:57:38 +0000"  >&lt;p&gt;Hi Miho Ishigaki,&lt;/p&gt;

&lt;p&gt;1) When you add a new catalog of templates, you have to create two directories : calibration/templates/&amp;lt;template_catalog_name&amp;gt;/star and copy the templates in it&lt;/p&gt;

&lt;p&gt;2) The format is TSV (tab separated values) with &apos;#&apos;&#160; for line comments and no headers&lt;/p&gt;

&lt;p&gt;3) The unit of flux is any multiple of erg.s-1.cm-2.angstrom-1&lt;/p&gt;

&lt;p&gt;4) Wavelength coverage : with input spectrum wavelength coverage as &lt;span class=&quot;error&quot;&gt;&amp;#91;lambda_min,lambda_max&amp;#93;&lt;/span&gt;, template wavelength coverage must be at least &lt;span class=&quot;error&quot;&gt;&amp;#91;lambda_min/(1+1E-3) , lambda_max/(1-1E-3)&amp;#93;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;5) For spectral resolution and wavelength sampling, no special requirements, they must be at least equivalent to PFS resolution&lt;/p&gt;

&lt;p&gt;The informations will be in next release MANUAL.md&lt;/p&gt;</comment>
                            <comment id="17722" author="ishigaki" created="Thu, 24 Sep 2020 01:33:23 +0000"  >&lt;p&gt;Thanks a lot for your comments! The code successfully choses the custom stellar template for a stellar spectrum in the chi2 solver.&lt;/p&gt;</comment>
                    </comments>
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            <issuekey id="14807">PIPE1D-24</issuekey>
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