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    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[INSTRM-409] Provide jupyter notebook to perform sac alignment</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/INSTRM-409</link>
                <project id="10300" key="INSTRM">Instrument control development</project>
                    <description>&lt;p&gt;For the first SAC (Slit Alignment Collimator) alignment, we have used a dedicated GUI which were mixing sequencing + monitoring + image analysis.&#160;&lt;/p&gt;

&lt;p&gt;But our approach has changed now and for all AIT alignment we&apos;ll be using the same scheme :&lt;/p&gt;
&lt;ul&gt;
	&lt;li&gt;ics_spsaitActor does the sequencing and the logging&lt;/li&gt;
	&lt;li&gt;ics_spsClient does the monitoring&lt;/li&gt;
	&lt;li&gt;ics_sequencePanel to launch the sequences&lt;/li&gt;
	&lt;li&gt;image analysis is done in jupyter notebook&lt;/li&gt;
&lt;/ul&gt;


&lt;p&gt;&#160; &#160;&lt;/p&gt;

&lt;p&gt;I need to provide a notebook which generates useful plots from a given experimentId&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;</description>
                <environment></environment>
        <key id="12626">INSTRM-409</key>
            <summary>Provide jupyter notebook to perform sac alignment</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="arnaud.lefur">arnaud.lefur</assignee>
                                    <reporter username="arnaud.lefur">arnaud.lefur</reporter>
                        <labels>
                            <label>SM1</label>
                    </labels>
                <created>Tue, 10 Jul 2018 09:05:14 +0000</created>
                <updated>Wed, 18 Jul 2018 14:00:10 +0000</updated>
                            <resolved>Mon, 16 Jul 2018 13:32:17 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>2</watches>
                                                                <comments>
                            <comment id="13780" author="hassan" created="Wed, 18 Jul 2018 13:31:36 +0000"  >&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=arnaud.lefur&quot; class=&quot;user-hover&quot; rel=&quot;arnaud.lefur&quot;&gt;arnaud.lefur&lt;/a&gt;: can you provide, as a comment in this ticket, a justification for resolving this ticket? Can you provide a link to the notebook?&lt;/p&gt;</comment>
                            <comment id="13782" author="arnaud.lefur" created="Wed, 18 Jul 2018 13:56:34 +0000"  >&lt;p&gt;Yes, I&apos;ve just created the repo on my github account :&#160;&lt;a href=&quot;https://github.com/alefur/ait-notebook/blob/master/Sac_Alignment-Final.ipynb&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;sacAlignment&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;</comment>
                            <comment id="13783" author="hassan" created="Wed, 18 Jul 2018 14:00:10 +0000"  >&lt;p&gt;Great, but at some point this will be pushed to master? That can be a separate ticket, it is just that ideally all changes should be pushed to the common repo.&lt;/p&gt;</comment>
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