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    <title>PFS-JIRA</title>
    <link>https://pfspipe.ipmu.jp/jira</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>8.3.4</version>
        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[INSTRM-1391] Theoretical cobra centers are not correct</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/INSTRM-1391</link>
                <project id="10300" key="INSTRM">Instrument control development</project>
                    <description>&lt;p&gt;As identified during the Engineering Run post-mortem telecon 2021-10-04 (&lt;a href=&quot;https://sumire.pbworks.com/w/page/146399862/Commissioning%20telecon%20on%20Oct%206%202021%20%28Wed%29%203%3A30%20UTC&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;https://sumire.pbworks.com/w/page/146399862/Commissioning%20telecon%20on%20Oct%206%202021%20%28Wed%29%203%3A30%20UTC&lt;/a&gt;), the theoretical cobra centers provided as input did not match those measured.&lt;/p&gt;

&lt;p&gt;Please find the cause and fix.&lt;/p&gt;

&lt;p&gt;Comment form &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=rhl&quot; class=&quot;user-hover&quot; rel=&quot;rhl&quot;&gt;rhl&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;
&lt;p&gt;I still don&apos;t understand how this will affect convergence unless the positions are &lt;em&gt;very&lt;/em&gt; off.  Chi-Hung re-measured the centroids from the theta moves early in the run, so does this mean that we need to debug/fix that code?&lt;/p&gt;

&lt;p&gt;It would be good to encapsulate that code in an fps command.  We should make sure that we have proper visualisation of the results too, including the results of Chi-Hung&apos;s analysis that shows that the current values aren&apos;t all quite right.&lt;/p&gt;&lt;/blockquote&gt;</description>
                <environment></environment>
        <key id="18233">INSTRM-1391</key>
            <summary>Theoretical cobra centers are not correct</summary>
                <type id="3" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10518&amp;avatarType=issuetype">Task</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="chyan">chyan</assignee>
                                    <reporter username="hassan">hassan</reporter>
                        <labels>
                            <label>EngRun</label>
                    </labels>
                <created>Mon, 11 Oct 2021 15:22:45 +0000</created>
                <updated>Mon, 25 Oct 2021 20:26:45 +0000</updated>
                            <resolved>Mon, 25 Oct 2021 20:26:45 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>3</watches>
                                                                <comments>
                            <comment id="23339" author="chyan" created="Wed, 20 Oct 2021 17:38:35 +0000"  >&lt;p&gt;I have uploaded the rotational center analysis.  According to the analysis, there are +/-20 micron difference in rotational center and XML file.  The center in XML needs to be updated.    Before, updating the XML, a suggesting is also raised in meeting, which is using sigma-clipping for circle fitting.  So that, we can avoid the problem when cobra spot is hidden by dots.  A function called filter_circle_fitting  in {{ ics.cobraCharmer.procedues.moduleTest.calculus}} was  implemented.  However, the filter threshold needs to fine tune.    &lt;/p&gt;


&lt;p&gt; &lt;span class=&quot;nobr&quot;&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/14248/14248_cobraRotationCenter.pdf&quot; title=&quot;cobraRotationCenter.pdf attached to INSTRM-1391&quot;&gt;cobraRotationCenter.pdf&lt;sup&gt;&lt;img class=&quot;rendericon&quot; src=&quot;https://pfspipe.ipmu.jp/jira/images/icons/link_attachment_7.gif&quot; height=&quot;7&quot; width=&quot;7&quot; align=&quot;absmiddle&quot; alt=&quot;&quot; border=&quot;0&quot;/&gt;&lt;/sup&gt;&lt;/a&gt;&lt;/span&gt; &lt;/p&gt;</comment>
                            <comment id="23351" author="chyan" created="Thu, 21 Oct 2021 17:01:39 +0000"  >&lt;p&gt;Those are related to the transformation issue.&lt;/p&gt;</comment>
                            <comment id="23352" author="chyan" created="Thu, 21 Oct 2021 17:03:11 +0000"  >&lt;p&gt;I went through the file I sent to Robert during the observation run (see attached file  &lt;span class=&quot;nobr&quot;&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/14251/14251_fiber_status_summary_20C90D.txt&quot; title=&quot;fiber_status_summary_20C90D.txt attached to INSTRM-1391&quot;&gt;fiber_status_summary_20C90D.txt&lt;sup&gt;&lt;img class=&quot;rendericon&quot; src=&quot;https://pfspipe.ipmu.jp/jira/images/icons/link_attachment_7.gif&quot; height=&quot;7&quot; width=&quot;7&quot; align=&quot;absmiddle&quot; alt=&quot;&quot; border=&quot;0&quot;/&gt;&lt;/sup&gt;&lt;/a&gt;&lt;/span&gt;).  There are 91 entries for FFs and the measurement were done at 20 degree C at EL90.  However, there are updated measurements under 0 and 20 degree C and at different EL angle.   &lt;/p&gt;</comment>
                            <comment id="23353" author="hassan" created="Thu, 21 Oct 2021 17:06:27 +0000"  >&lt;p&gt;Could you possibly describe what each column in the file  &lt;span class=&quot;nobr&quot;&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/attachment/14251/14251_fiber_status_summary_20C90D.txt&quot; title=&quot;fiber_status_summary_20C90D.txt attached to INSTRM-1391&quot;&gt;fiber_status_summary_20C90D.txt&lt;sup&gt;&lt;img class=&quot;rendericon&quot; src=&quot;https://pfspipe.ipmu.jp/jira/images/icons/link_attachment_7.gif&quot; height=&quot;7&quot; width=&quot;7&quot; align=&quot;absmiddle&quot; alt=&quot;&quot; border=&quot;0&quot;/&gt;&lt;/sup&gt;&lt;/a&gt;&lt;/span&gt; corresponds to please &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=chyan&quot; class=&quot;user-hover&quot; rel=&quot;chyan&quot;&gt;chyan&lt;/a&gt;?&lt;/p&gt;</comment>
                            <comment id="24785" author="chyan" created="Mon, 25 Oct 2021 20:13:35 +0000"  >&lt;p&gt;I think the only useful information is column 1,4,5, which are FF id, x and y in mm.  &lt;/p&gt;</comment>
                            <comment id="24786" author="chyan" created="Mon, 25 Oct 2021 20:24:59 +0000"  >&lt;p&gt;I have generated a new XML with updated centers based on new measurements.  We should use this updated one for coming test.  I updated the XML in pfs_insdata.  &lt;/p&gt;</comment>
                    </comments>
                <issuelinks>
                            <issuelinktype id="10000">
                    <name>Blocks</name>
                                            <outwardlinks description="blocks">
                                        <issuelink>
            <issuekey id="18230">INSTRM-1388</issuekey>
        </issuelink>
                            </outwardlinks>
                                                        </issuelinktype>
                            <issuelinktype id="10003">
                    <name>Relates</name>
                                            <outwardlinks description="relates to">
                                        <issuelink>
            <issuekey id="18237">INSTRM-1395</issuekey>
        </issuelink>
                            </outwardlinks>
                                                        </issuelinktype>
                    </issuelinks>
                <attachments>
                            <attachment id="14248" name="cobraRotationCenter.pdf" size="9065329" author="chyan" created="Wed, 20 Oct 2021 17:19:42 +0000"/>
                            <attachment id="14253" name="ffdata.zip" size="32599" author="chyan" created="Thu, 21 Oct 2021 17:06:22 +0000"/>
                            <attachment id="14252" name="ffdata.zip" size="32599" author="chyan" created="Thu, 21 Oct 2021 17:06:06 +0000"/>
                            <attachment id="14251" name="fiber_status_summary_20C90D.txt" size="432811" author="chyan" created="Thu, 21 Oct 2021 16:59:54 +0000"/>
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