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        <build-number>803005</build-number>
        <build-date>13-09-2019</build-date>
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<item>
            <title>[DAMD-73] PfsArm needs additional information to recover raw counts</title>
                <link>https://pfspipe.ipmu.jp/jira/browse/DAMD-73</link>
                <project id="10400" key="DAMD">Data Model</project>
                    <description>&lt;p&gt;The &lt;tt&gt;datamodel.txt&lt;/tt&gt; information for the &lt;tt&gt;pfsArm&lt;/tt&gt; object mentions that &apos;the pfsFiberTrace file contains enough information to recover the raw counts and the widths of the fiber traces&apos;. However, this is not currently possible as the &lt;tt&gt;pfsArm&lt;/tt&gt; object only contains a FLUX HDU (in units of nJy), but no additional calibration vector or equivalent to recover the raw counts. &lt;/p&gt;

&lt;p&gt;It may not even be necessary to store the flux in nJy at this stage, as flux calibration is performed later in the pipeline.&lt;/p&gt;

&lt;p&gt;Please add an additional HDU to this object such that raw counts can be derived. In addition consider whether the FLUX HDU really needs to carry absolute fluxes, or store &apos;flux&apos; measurements relative to the illuminating quartz lamps.&lt;/p&gt;</description>
                <environment></environment>
        <key id="14170">DAMD-73</key>
            <summary>PfsArm needs additional information to recover raw counts</summary>
                <type id="10001" iconUrl="https://pfspipe.ipmu.jp/jira/secure/viewavatar?size=xsmall&amp;avatarId=10515&amp;avatarType=issuetype">Story</type>
                                            <priority id="10000" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/priorities/medium.svg">Normal</priority>
                        <status id="10002" iconUrl="https://pfspipe.ipmu.jp/jira/images/icons/statuses/generic.png" description="The issue is resolved, reviewed, and merged">Done</status>
                    <statusCategory id="3" key="done" colorName="green"/>
                                    <resolution id="10000">Done</resolution>
                                        <assignee username="price">price</assignee>
                                    <reporter username="hassan">hassan</reporter>
                        <labels>
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                <created>Tue, 24 Dec 2019 22:25:32 +0000</created>
                <updated>Mon, 4 Jan 2021 20:23:05 +0000</updated>
                            <resolved>Mon, 9 Mar 2020 21:20:22 +0000</resolved>
                                                                        <due></due>
                            <votes>0</votes>
                                    <watches>1</watches>
                                                                <comments>
                            <comment id="16758" author="price" created="Tue, 25 Feb 2020 00:21:35 +0000"  >&lt;p&gt;The fiber trace normalisation is that of the quartz lamp, and so &lt;tt&gt;pfsArm&lt;/tt&gt; fluxes (extracted using the fiber trace) are relative to the quartz lamp (i.e., the fluxes are relative, not nJy). So I think the required condition (&quot;the pfsFiberTrace file contains enough information to recover the raw counts and the widths of the fiber traces&quot;) is already met, without the need to add anything more.&lt;/p&gt;

&lt;p&gt;&lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=hassan&quot; class=&quot;user-hover&quot; rel=&quot;hassan&quot;&gt;hassan&lt;/a&gt;, could you verify that this is sufficient?&lt;/p&gt;</comment>
                            <comment id="16807" author="hassan" created="Thu, 5 Mar 2020 19:17:26 +0000"  >&lt;p&gt;Following discussions with &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/secure/ViewProfile.jspa?name=rhl&quot; class=&quot;user-hover&quot; rel=&quot;rhl&quot;&gt;rhl&lt;/a&gt;: following &lt;a href=&quot;https://pfspipe.ipmu.jp/jira/browse/DAMD-73&quot; title=&quot;PfsArm needs additional information to recover raw counts&quot; class=&quot;issue-link&quot; data-issue-key=&quot;DAMD-73&quot;&gt;&lt;del&gt;DAMD-73&lt;/del&gt;&lt;/a&gt;, the &lt;tt&gt;datamodel.txt&lt;/tt&gt; will be updated such that the fluxes are relative, not nJy. We would then need a function that can recover the raw counts given a &lt;tt&gt;pfsArm&lt;/tt&gt; object (eg for a science observation). Once that&apos;s done, this ticket can be closed.&lt;/p&gt;</comment>
                            <comment id="16818" author="price" created="Mon, 9 Mar 2020 19:58:50 +0000"  >&lt;p&gt;I&apos;ve added a &lt;tt&gt;PfsFiberTrace.calculateCounts&lt;/tt&gt; method.&lt;/p&gt;</comment>
                            <comment id="16821" author="price" created="Mon, 9 Mar 2020 21:20:22 +0000"  >&lt;p&gt;Merged to master.&lt;/p&gt;</comment>
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            <issuekey id="14225">DAMD-75</issuekey>
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            <issuekey id="14140">PIPE2D-492</issuekey>
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