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The 3x variation of fluxes within a spectrograph module appears to be due to a combination of vignetting in the corrector and scale changes with radius. It does not mean that the spectrograph has 3x less throughput at large radius, as point sources will not scale the same.
There is a ~40% difference between the fluxes for r1 and r3 (r3 is larger). It's not yet clear where this comes from.
Both these variations appear to normalise out using the quartzes.
The current fiber profiles normalisations have a bunch of holes, due to NANs from masked pixels in the combined image; I've fixed this.
Merged changes to master after a quick informal review by hassan.
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