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Ok, there are few issues here.
- First, the centroid algorithm was optimized for real MCS spots. When using 71M, the current settings are not suitable for 71M spots. The current MCS optimizations could not detect all 71M spots.
- The pfs_utils 6.1.2 and 6.1.4 are different when transferring spot from pixel to mm. In the plot, we asked cobra to be at home position. As we can see, both versions give different results.
- Using createTrajectory in convergence loop creates funny results. The convergence number increased from ~16 to ~50, two times more. Also, it impacts the convergence speed. This is the convergence without createTrajectory:
This is with createTrajectory
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