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A few changes made to update the centroiding and fibre identification based on changes made in the last engineering run.
- An optional switch cMethod to change method of centroiding during operation. default is 'win'
- updated the fibre identification routine to use the new transformation object
- removed / commented out a bunch of now obsolete code that was designed to test the process in the absence of mm units, real fiducial fibres, etc.
- changed tranform -> transform in function name
- updated the threshold calculation to use the most recent boresight as an estimate of the centre of the field
The end result is simpler code. There's probably still some non-critical tidying that can be taken care of later.
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