mkdir -p $PREFIX cd $PREFIX # Install LSST lsst_args="" [ -n "$PACKAGES" ] && lsst_args+=" -p \"$PACKAGES\"" [ -n "$LSST_VERSION" ] && lsst_args+=" -L \"$LSST_VERSION\"" bash $HERE/bin/install_lsst.sh ${lsst_args} install_lsst $LSST_VERSION "$PACKAGES" % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 29178 100 29178 0 0 244k 0 --:--:-- --:--:-- --:--:-- 245k LSST Software Stack Builder ======================================================================= !!! This script differs from the official version on the distribution server. If this is not intentional, get the current version from here: https://raw.githubusercontent.com/lsst/lsst/master/scripts/newinstall.sh Detected git version 2.8.1. OK. ::: Deploying Miniconda3-4.3.21-MacOSX-x86_64.sh PREFIX=/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/python/miniconda3-4.3.21 installing: python-3.6.1-2 ... installing: asn1crypto-0.22.0-py36_0 ... installing: cffi-1.10.0-py36_0 ... installing: conda-env-2.6.0-0 ... installing: cryptography-1.8.1-py36_0 ... installing: idna-2.5-py36_0 ... installing: openssl-1.0.2l-0 ... installing: packaging-16.8-py36_0 ... installing: pycosat-0.6.2-py36_0 ... installing: pycparser-2.17-py36_0 ... installing: pyopenssl-17.0.0-py36_0 ... installing: pyparsing-2.1.4-py36_0 ... installing: readline-6.2-2 ... installing: requests-2.14.2-py36_0 ... installing: ruamel_yaml-0.11.14-py36_1 ... installing: setuptools-27.2.0-py36_0 ... installing: six-1.10.0-py36_0 ... installing: sqlite-3.13.0-0 ... installing: tk-8.5.18-0 ... installing: xz-5.2.2-1 ... installing: yaml-0.1.6-0 ... installing: zlib-1.2.8-3 ... installing: conda-4.3.21-py36_0 ... installing: pip-9.0.1-py36_1 ... installing: wheel-0.29.0-py36_0 ... Python 3.6.1 :: Continuum Analytics, Inc. creating default environment... installation finished. WARNING: You currently have a PYTHONPATH environment variable set. This may cause unexpected behavior when running the Python interpreter in Miniconda3. For best results, please verify that your PYTHONPATH only points to directories of packages that are compatible with the Python interpreter in Miniconda3: /work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/python/miniconda3-4.3.21 Fetching package metadata ......... Solving package specifications: . Package plan for installation in environment /work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/python/miniconda3-4.3.21: The following NEW packages will be INSTALLED: astropy: 2.0.1-np113py36_0 blas: 1.0-mkl bottleneck: 1.2.1-np113py36_0 certifi: 2016.2.28-py36_0 cycler: 0.10.0-py36_0 cython: 0.26-py36_0 freetype: 2.5.5-2 future: 0.16.0-py36_1 icu: 54.1-0 libpng: 1.6.30-1 matplotlib: 2.0.2-np113py36_0 mkl: 2017.0.3-0 numexpr: 2.6.2-np113py36_0 numpy: 1.13.1-py36_0 pandas: 0.20.3-py36_0 py: 1.4.34-py36_0 pyqt: 5.6.0-py36_2 pytest: 3.2.1-py36_0 python-dateutil: 2.6.1-py36_0 pytz: 2017.2-py36_0 pyyaml: 3.12-py36_0 qt: 5.6.2-2 scipy: 0.19.1-np113py36_0 sip: 4.18-py36_0 sqlalchemy: 1.1.13-py36_0 The following packages will be UPDATED: conda: 4.3.21-py36_0 --> 4.3.30-py36h173c244_0 python: 3.6.1-2 --> 3.6.2-0 setuptools: 27.2.0-py36_0 --> 36.4.0-py36_0 Configured EUPS_PKGROOT: https://eups.lsst.codes/stack/osx/10.9/clang-800.0.42.1/miniconda3-4.3.21-10a4fa6|https://eups.lsst.codes/stack/src Using python at /work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/python/miniconda3-4.3.21/bin/python to install EUPS Installing EUPS (2.1.4)... done. Creating startup scripts (bash) ... done. Creating startup scripts (ksh) ... done. Creating startup scripts (csh) ... done. Creating startup scripts (zsh) ... done. Bootstrap complete. To continue installing (and to use) the LSST stack type one of: source "/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/loadLSST.bash" # for bash source "/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/loadLSST.csh" # for csh source "/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/loadLSST.ksh" # for ksh source "/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/loadLSST.zsh" # for zsh Individual LSST packages may now be installed with the usual `eups distrib install` command. For example, to install the science pipeline elements of the LSST stack, use: eups distrib install lsst_apps Next, read the documentation at: https://pipelines.lsst.io and feel free to ask any questions via the LSST Community forum: https://community.lsst.org/c/support Thanks! -- The LSST Software Teams http://dm.lsst.org/ # This script is intended to be used with bash to load the minimal LSST # environment # Usage: source loadLSST.bash export PATH="/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/python/miniconda3-4.3.21/bin:${PATH}" LSST_HOME="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd dirname "${BASH_SOURCE[0]}" # Bootstrap EUPS EUPS_DIR="${LSST_HOME}/eups/2.1.4" source "${EUPS_DIR}/bin/setups.sh" ### ### AUTOGENERATED BY EUPS' configure script (via bin/mksetup) ### # this is how EUPS knows which shell it's operating under export EUPS_SHELL=sh # allow the user to override EUPS_DIR export EUPS_DIR=${EUPS_DIR:-/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/eups/2.1.4} eupslocalpath=$(echo "$EUPS_DIR" | sed -e "s/ /-+-/g") echo "$EUPS_DIR" | sed -e "s/ /-+-/g" # Set EUPS_PATH, appending any pre-existing EUPS_PATH (and only keeping # one copy of each directory) export EUPS_PATH=`"/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/python/miniconda3-4.3.21/bin/python" -E -c ' from __future__ import print_function import sys pp = [] for d in sys.argv[1].split(":"): if d and d not in pp: pp += [d] if not sys.argv[2] in pp: pp = [sys.argv[2]] + pp print(":".join(pp))' "$EUPS_PATH" "/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/stack/miniconda3-4.3.21-10a4fa6"` "/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/python/miniconda3-4.3.21/bin/python" -E -c ' from __future__ import print_function import sys pp = [] for d in sys.argv[1].split(":"): if d and d not in pp: pp += [d] if not sys.argv[2] in pp: pp = [sys.argv[2]] + pp print(":".join(pp))' "$EUPS_PATH" "/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/stack/miniconda3-4.3.21-10a4fa6" _eups_path=$EUPS_PATH # setup EUPS, using EUPS # n.b.: we reset the flavor in SETUP_EUPS so eups doesn't show up in 'eups list' # and similar. This is for backwards compatibility. eval `"$EUPS_DIR/bin/eups_setup" "DYLD_LIBRARY_PATH=${DYLD_LIBRARY_PATH}" eups -r "$EUPS_DIR"` "$EUPS_DIR/bin/eups_setup" "DYLD_LIBRARY_PATH=${DYLD_LIBRARY_PATH}" eups -r "$EUPS_DIR" Traceback (most recent call last): File "/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/eups/2.1.4/bin/eups_setup", line 28, in import eups.setupcmd ModuleNotFoundError: No module named 'eups.setupcmd' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/work/PFS/drp/2d-drp/installation_test/pipe2d/script/bin/stack/eups/2.1.4/bin/eups_setup", line 42, in import eups.setupcmd ModuleNotFoundError: No module named 'eups.setupcmd' export SETUP_EUPS="eups LOCAL:$eupslocalpath -f (none) -Z (none)" export EUPS_PATH=$_eups_path # make sure that the setup script didn't reset EUPS_PATH unset eupslocalpath _eups_path # bash auto-completion if [ X$BASH_COMPLETION != X -a -f "$EUPS_DIR/etc/bash_completion.d/eups" ]; then source "$EUPS_DIR/etc/bash_completion.d/eups" fi export -f setup loadLSST.bash: line 11: export: setup: not a function